miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 31 0.68 0.357963
Target:  5'- -cGCGCCGCaACgUGGUauGCGCGGCa -3'
miRNA:   3'- guUGCGGCGgUG-GCCAgcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 140 0.69 0.290316
Target:  5'- gCGACGCCaGCCcggaaacGCCGGUCGAacCGGUg -3'
miRNA:   3'- -GUUGCGG-CGG-------UGGCCAGCUgcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 322 0.69 0.304989
Target:  5'- cCAACGCC-CgCACCGGguaCGGCGCGaaGCg -3'
miRNA:   3'- -GUUGCGGcG-GUGGCCa--GCUGCGC--CGa -5'
19254 5' -61.6 NC_004684.1 + 515 0.69 0.293759
Target:  5'- gAAgGUCGCCACCGG-CGcugacgugcuggccaGCGCGGUc -3'
miRNA:   3'- gUUgCGGCGGUGGCCaGC---------------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 553 0.68 0.366037
Target:  5'- uCGAgGCCGCCACCgaGGagGACaaGGCc -3'
miRNA:   3'- -GUUgCGGCGGUGG--CCagCUGcgCCGa -5'
19254 5' -61.6 NC_004684.1 + 698 0.7 0.277522
Target:  5'- cCGAgGUCaGCCGCCGGUgGACGgccUGGCg -3'
miRNA:   3'- -GUUgCGG-CGGUGGCCAgCUGC---GCCGa -5'
19254 5' -61.6 NC_004684.1 + 919 0.77 0.085151
Target:  5'- ---aGCCGCCACCGGguggCGGCGUGGa- -3'
miRNA:   3'- guugCGGCGGUGGCCa---GCUGCGCCga -5'
19254 5' -61.6 NC_004684.1 + 945 0.67 0.382559
Target:  5'- aCAACGCCGCCACCcugacguaaaGUCGuACcuguaCGGCg -3'
miRNA:   3'- -GUUGCGGCGGUGGc---------CAGC-UGc----GCCGa -5'
19254 5' -61.6 NC_004684.1 + 1118 0.7 0.252063
Target:  5'- aCGugGCCGuCCGCUGGgaCGACGCcGCg -3'
miRNA:   3'- -GUugCGGC-GGUGGCCa-GCUGCGcCGa -5'
19254 5' -61.6 NC_004684.1 + 1396 0.71 0.240072
Target:  5'- gGGCgGCgGCUACCGGUaCGG-GCGGCUg -3'
miRNA:   3'- gUUG-CGgCGGUGGCCA-GCUgCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 1621 0.73 0.173345
Target:  5'- -uGCGCgCGcCCACCGG-CG-CGCGGCg -3'
miRNA:   3'- guUGCG-GC-GGUGGCCaGCuGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 2082 0.67 0.382559
Target:  5'- -cGCGCCaGCUcgcaACUGGUggcgcagcacuaCGGCGCGGCg -3'
miRNA:   3'- guUGCGG-CGG----UGGCCA------------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 2281 0.72 0.201813
Target:  5'- --uUGCCGCCAgcCUGGgccaCGACGCGGUg -3'
miRNA:   3'- guuGCGGCGGU--GGCCa---GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 2469 0.67 0.425973
Target:  5'- uCAcCGCCGCCACCugGGUCGcCGCc--- -3'
miRNA:   3'- -GUuGCGGCGGUGG--CCAGCuGCGccga -5'
19254 5' -61.6 NC_004684.1 + 2518 0.66 0.435002
Target:  5'- aCGACGCCcgGCaCugCGGaCGcUGCGGCa -3'
miRNA:   3'- -GUUGCGG--CG-GugGCCaGCuGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 3175 0.66 0.453386
Target:  5'- cCAACGCCGUguCCcagguGUCGAUcCGGCa -3'
miRNA:   3'- -GUUGCGGCGguGGc----CAGCUGcGCCGa -5'
19254 5' -61.6 NC_004684.1 + 3364 0.68 0.366037
Target:  5'- aCAcCGCCGaCACCgaGGUCaaGCGCGGCa -3'
miRNA:   3'- -GUuGCGGCgGUGG--CCAGc-UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 3706 0.66 0.444141
Target:  5'- cCAGCGCCGCCgcgcugGCCGGUaucaACGCuucGCa -3'
miRNA:   3'- -GUUGCGGCGG------UGGCCAgc--UGCGc--CGa -5'
19254 5' -61.6 NC_004684.1 + 3796 0.7 0.264544
Target:  5'- uGACGCCGCCGCCuuggcGGUCaaggaucugcugGGCGCguucGGCg -3'
miRNA:   3'- gUUGCGGCGGUGG-----CCAG------------CUGCG----CCGa -5'
19254 5' -61.6 NC_004684.1 + 3882 0.66 0.481731
Target:  5'- gCGACGCCagGCCGCCcuGcUGGCGCaGGCg -3'
miRNA:   3'- -GUUGCGG--CGGUGGc-CaGCUGCG-CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.