miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 61091 1.07 0.0005
Target:  5'- gCAACGCCGCCACCGGUCGACGCGGCUa -3'
miRNA:   3'- -GUUGCGGCGGUGGCCAGCUGCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 26403 0.83 0.030061
Target:  5'- cCAACGCCGCCACCGG-CG-CGCuGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGGCCaGCuGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 26972 0.83 0.030061
Target:  5'- cCAACGCCGCCauccagGCCGGUgCGAgCGCGGCg -3'
miRNA:   3'- -GUUGCGGCGG------UGGCCA-GCU-GCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 8867 0.83 0.033031
Target:  5'- cCAACGCCGCCGCCaacGGcacgcuggaccgcagUCGGCGCGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGG---CC---------------AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 65769 0.78 0.072405
Target:  5'- --cCGCCGCgCGCCGGUgGGCGCGcGCa -3'
miRNA:   3'- guuGCGGCG-GUGGCCAgCUGCGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 22432 0.78 0.072405
Target:  5'- uCAACGCCaUCGCC-GUCGGCGCGGCg -3'
miRNA:   3'- -GUUGCGGcGGUGGcCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 36778 0.77 0.082887
Target:  5'- cCggUGCCGaCGCUGGUCGGCGgCGGCUc -3'
miRNA:   3'- -GuuGCGGCgGUGGCCAGCUGC-GCCGA- -5'
19254 5' -61.6 NC_004684.1 + 919 0.77 0.085151
Target:  5'- ---aGCCGCCACCGGguggCGGCGUGGa- -3'
miRNA:   3'- guugCGGCGGUGGCCa---GCUGCGCCga -5'
19254 5' -61.6 NC_004684.1 + 13107 0.77 0.085151
Target:  5'- -cACGCCGCCccACCGGcCaGCGCGGCa -3'
miRNA:   3'- guUGCGGCGG--UGGCCaGcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 54275 0.76 0.095572
Target:  5'- cCAGCGCCGCCAcCCGGccgggggugcgcgcaUCGGCccccuugGCGGCUg -3'
miRNA:   3'- -GUUGCGGCGGU-GGCC---------------AGCUG-------CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 33475 0.76 0.100017
Target:  5'- uCGGCGgCGgCugCGGUgGACGCGGCg -3'
miRNA:   3'- -GUUGCgGCgGugGCCAgCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 30041 0.76 0.105495
Target:  5'- gAACGCgCGCuCGCCGGUCGguuGCGGCg -3'
miRNA:   3'- gUUGCG-GCG-GUGGCCAGCug-CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 18335 0.75 0.111254
Target:  5'- cCggUGCCGCCcccggagccgACCGG-CGGCGCGGUg -3'
miRNA:   3'- -GuuGCGGCGG----------UGGCCaGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 9969 0.75 0.114243
Target:  5'- cUAACGCCGCCggcacACCGGUCGAgugauaCGCuGGCc -3'
miRNA:   3'- -GUUGCGGCGG-----UGGCCAGCU------GCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 51569 0.75 0.114243
Target:  5'- gCGAUGCCgcgcGCCACCGGgucgcUCGGCGUGGUg -3'
miRNA:   3'- -GUUGCGG----CGGUGGCC-----AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 40791 0.75 0.121725
Target:  5'- uGACGCCGCCGCCGGUggCGAacccgcgcacaccgcCGCGcGCc -3'
miRNA:   3'- gUUGCGGCGGUGGCCA--GCU---------------GCGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 30622 0.75 0.123665
Target:  5'- cCAGCGUCGgCACCGGgcgCGGCccugGCGGCg -3'
miRNA:   3'- -GUUGCGGCgGUGGCCa--GCUG----CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 61474 0.75 0.126963
Target:  5'- cCAGCGCgGCCAgCCGGUCGuGCGCGaucaGCg -3'
miRNA:   3'- -GUUGCGgCGGU-GGCCAGC-UGCGC----CGa -5'
19254 5' -61.6 NC_004684.1 + 46786 0.75 0.130342
Target:  5'- --cCGUCGaCCGuCCGGUCGugGCGGUa -3'
miRNA:   3'- guuGCGGC-GGU-GGCCAGCugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 49043 0.74 0.136992
Target:  5'- gCAcCG-CGCCGCCGGUCGGCuccggggGCGGCa -3'
miRNA:   3'- -GUuGCgGCGGUGGCCAGCUG-------CGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.