miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 3706 0.66 0.444141
Target:  5'- cCAGCGCCGCCgcgcugGCCGGUaucaACGCuucGCa -3'
miRNA:   3'- -GUUGCGGCGG------UGGCCAgc--UGCGc--CGa -5'
19254 5' -61.6 NC_004684.1 + 25381 0.66 0.462736
Target:  5'- uCAGCGCCuacGCCGCCG--CGcACaGCGGCg -3'
miRNA:   3'- -GUUGCGG---CGGUGGCcaGC-UG-CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 12346 0.66 0.478857
Target:  5'- aCAACaCCGCCcCCGGUCuaacuggcuuaccgGGgGCGGUg -3'
miRNA:   3'- -GUUGcGGCGGuGGCCAG--------------CUgCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 18719 0.66 0.444141
Target:  5'- gGugGCaCGCUcucGCUGGaUGugGCGGCg -3'
miRNA:   3'- gUugCG-GCGG---UGGCCaGCugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 42921 0.66 0.472185
Target:  5'- gAACGCCGCCAggugauacCCuGaCGGCGCuuguGGCUg -3'
miRNA:   3'- gUUGCGGCGGU--------GGcCaGCUGCG----CCGA- -5'
19254 5' -61.6 NC_004684.1 + 48064 0.66 0.444141
Target:  5'- uGGCGguuUCGaCCACCGGUucCGGCGuCGGCc -3'
miRNA:   3'- gUUGC---GGC-GGUGGCCA--GCUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 49085 0.66 0.443222
Target:  5'- aCGuCGCCGCCaACCGGcaggugccacaggUCGcCGuCGGCg -3'
miRNA:   3'- -GUuGCGGCGG-UGGCC-------------AGCuGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 7573 0.66 0.453387
Target:  5'- uGGCGCUgguGCgGCUGGU--GCGCGGCa -3'
miRNA:   3'- gUUGCGG---CGgUGGCCAgcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 66345 0.66 0.471236
Target:  5'- uGACGCCggggcggGCgGCCaGGgCGACGCGGgUg -3'
miRNA:   3'- gUUGCGG-------CGgUGG-CCaGCUGCGCCgA- -5'
19254 5' -61.6 NC_004684.1 + 15118 0.66 0.444141
Target:  5'- --uUGCCGUCACCGG--GACGCugGGCc -3'
miRNA:   3'- guuGCGGCGGUGGCCagCUGCG--CCGa -5'
19254 5' -61.6 NC_004684.1 + 12937 0.66 0.472185
Target:  5'- aCuuCGCCGCCGucggcacccCCGGUgcucccgcCGACcgGCGGCa -3'
miRNA:   3'- -GuuGCGGCGGU---------GGCCA--------GCUG--CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 62355 0.66 0.435002
Target:  5'- -cGCGCCaGCCugCGcaccucGUCGuCGCGGUc -3'
miRNA:   3'- guUGCGG-CGGugGC------CAGCuGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 58357 0.66 0.461796
Target:  5'- uGGCGuuGCCgcGCCGGUUGcCGCcccgcacGGCa -3'
miRNA:   3'- gUUGCggCGG--UGGCCAGCuGCG-------CCGa -5'
19254 5' -61.6 NC_004684.1 + 10684 0.66 0.435002
Target:  5'- gAACGCC-UCAaCGGUCggGACGCGGUg -3'
miRNA:   3'- gUUGCGGcGGUgGCCAG--CUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 58507 0.66 0.462736
Target:  5'- -cGCGCCGaCugCGGUCcagcgugccguuGGCGgCGGCg -3'
miRNA:   3'- guUGCGGCgGugGCCAG------------CUGC-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 32888 0.66 0.472185
Target:  5'- gGGCGgUGCuCACCc-UCGACGCGGUUg -3'
miRNA:   3'- gUUGCgGCG-GUGGccAGCUGCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 37501 0.66 0.434094
Target:  5'- aCGAC-CCGCCAcCCGGUuacgaCGACcugaugcacgacuGCGGCg -3'
miRNA:   3'- -GUUGcGGCGGU-GGCCA-----GCUG-------------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 41832 0.66 0.473136
Target:  5'- aGGCGCUgGCCACCGacgcguacgcguuccUCGGCGUGGUc -3'
miRNA:   3'- gUUGCGG-CGGUGGCc--------------AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 42099 0.66 0.481731
Target:  5'- --cCGCCGCCGCCuGGU-GugGCcggaaGGCc -3'
miRNA:   3'- guuGCGGCGGUGG-CCAgCugCG-----CCGa -5'
19254 5' -61.6 NC_004684.1 + 55703 0.66 0.462736
Target:  5'- cCAGCGCgacaGCCGuauCCGG-CGACGUuuGGCg -3'
miRNA:   3'- -GUUGCGg---CGGU---GGCCaGCUGCG--CCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.