miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 63565 0.71 0.227996
Target:  5'- --cCGCUGCCAUCaGGUccaucggccugcgCGGCGCGGCg -3'
miRNA:   3'- guuGCGGCGGUGG-CCA-------------GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 16255 0.74 0.151235
Target:  5'- -uACGUCGCUcgcccgguguucgcGCCGGgccCGACGCGGCg -3'
miRNA:   3'- guUGCGGCGG--------------UGGCCa--GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 28563 0.73 0.156409
Target:  5'- cCAACaccCCGCCACCGGUguGCGgCGGCUg -3'
miRNA:   3'- -GUUGc--GGCGGUGGCCAgcUGC-GCCGA- -5'
19254 5' -61.6 NC_004684.1 + 42218 0.73 0.156409
Target:  5'- cCGACGUgGCCGCCGGugUCGGCacCGGCg -3'
miRNA:   3'- -GUUGCGgCGGUGGCC--AGCUGc-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 42630 0.73 0.167669
Target:  5'- --cCGCCGCCGCCGGUgcuggugccgccagCGaugaGCGCGGUg -3'
miRNA:   3'- guuGCGGCGGUGGCCA--------------GC----UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 38664 0.72 0.187103
Target:  5'- aCGGCGUCGaCCugauCCaGGUcCGGCGCGGCUc -3'
miRNA:   3'- -GUUGCGGC-GGu---GG-CCA-GCUGCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 2281 0.72 0.201813
Target:  5'- --uUGCCGCCAgcCUGGgccaCGACGCGGUg -3'
miRNA:   3'- guuGCGGCGGU--GGCCa---GCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 22328 0.72 0.201813
Target:  5'- cCGugGcCCGCCAcCCGGUacaggcgGugGCGGCg -3'
miRNA:   3'- -GUugC-GGCGGU-GGCCAg------CugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 35827 0.71 0.217518
Target:  5'- aCGACGCCGCCAgCu-UCGACGUaGGCa -3'
miRNA:   3'- -GUUGCGGCGGUgGccAGCUGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 66474 0.74 0.137351
Target:  5'- -cACGCCGCCACCcg--GugGCGGCUa -3'
miRNA:   3'- guUGCGGCGGUGGccagCugCGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 46786 0.75 0.130342
Target:  5'- --cCGUCGaCCGuCCGGUCGugGCGGUa -3'
miRNA:   3'- guuGCGGC-GGU-GGCCAGCugCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 18335 0.75 0.111254
Target:  5'- cCggUGCCGCCcccggagccgACCGG-CGGCGCGGUg -3'
miRNA:   3'- -GuuGCGGCGG----------UGGCCaGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 26403 0.83 0.030061
Target:  5'- cCAACGCCGCCACCGG-CG-CGCuGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGGCCaGCuGCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 26972 0.83 0.030061
Target:  5'- cCAACGCCGCCauccagGCCGGUgCGAgCGCGGCg -3'
miRNA:   3'- -GUUGCGGCGG------UGGCCA-GCU-GCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 22432 0.78 0.072405
Target:  5'- uCAACGCCaUCGCC-GUCGGCGCGGCg -3'
miRNA:   3'- -GUUGCGGcGGUGGcCAGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 65769 0.78 0.072405
Target:  5'- --cCGCCGCgCGCCGGUgGGCGCGcGCa -3'
miRNA:   3'- guuGCGGCG-GUGGCCAgCUGCGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 36778 0.77 0.082887
Target:  5'- cCggUGCCGaCGCUGGUCGGCGgCGGCUc -3'
miRNA:   3'- -GuuGCGGCgGUGGCCAGCUGC-GCCGA- -5'
19254 5' -61.6 NC_004684.1 + 13107 0.77 0.085151
Target:  5'- -cACGCCGCCccACCGGcCaGCGCGGCa -3'
miRNA:   3'- guUGCGGCGG--UGGCCaGcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 54275 0.76 0.095572
Target:  5'- cCAGCGCCGCCAcCCGGccgggggugcgcgcaUCGGCccccuugGCGGCUg -3'
miRNA:   3'- -GUUGCGGCGGU-GGCC---------------AGCUG-------CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 33475 0.76 0.100017
Target:  5'- uCGGCGgCGgCugCGGUgGACGCGGCg -3'
miRNA:   3'- -GUUGCgGCgGugGCCAgCUGCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.