miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19255 5' -60.1 NC_004684.1 + 272 0.67 0.436036
Target:  5'- -cGGcgaGGCCUUcGUGcACACCUGGCa -3'
miRNA:   3'- aaCCa--CCGGAGcCGCaUGUGGACCGg -5'
19255 5' -60.1 NC_004684.1 + 1228 0.72 0.198226
Target:  5'- ----cGGCCUCGGCG---GCCUGGUCg -3'
miRNA:   3'- aaccaCCGGAGCCGCaugUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 1277 0.71 0.240524
Target:  5'- cUGGUGGCCauguuccgguacgCGcGCG-ACGCgUGGCCg -3'
miRNA:   3'- aACCACCGGa------------GC-CGCaUGUGgACCGG- -5'
19255 5' -60.1 NC_004684.1 + 1952 0.7 0.302949
Target:  5'- -cGGUGGCCgcgCGccgcacgccaGCGcaGCGCCUGGCg -3'
miRNA:   3'- aaCCACCGGa--GC----------CGCa-UGUGGACCGg -5'
19255 5' -60.1 NC_004684.1 + 2042 0.72 0.198225
Target:  5'- cUGGUGGCCcUGGgGgcCGCCaucgUGGCCu -3'
miRNA:   3'- aACCACCGGaGCCgCauGUGG----ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 2158 0.69 0.317741
Target:  5'- -cGGUGaaCUCGGCGUugACggucaUGGCCc -3'
miRNA:   3'- aaCCACcgGAGCCGCAugUGg----ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 2457 0.67 0.42677
Target:  5'- cUGGgcGGCCagcUCGGCGUGCcguaccACCUGaCCu -3'
miRNA:   3'- aACCa-CCGG---AGCCGCAUG------UGGACcGG- -5'
19255 5' -60.1 NC_004684.1 + 2931 0.66 0.484028
Target:  5'- -aGGU-GCCUcCGGUGccgaGCACCgaGGCCa -3'
miRNA:   3'- aaCCAcCGGA-GCCGCa---UGUGGa-CCGG- -5'
19255 5' -60.1 NC_004684.1 + 4046 0.68 0.399686
Target:  5'- -cGGUGGCCUacCGGCcauCGCCgGGUg -3'
miRNA:   3'- aaCCACCGGA--GCCGcauGUGGaCCGg -5'
19255 5' -60.1 NC_004684.1 + 4468 0.67 0.445418
Target:  5'- cUGGUcGGCUUcgucacCGGCcaGgGCCUGGCCc -3'
miRNA:   3'- aACCA-CCGGA------GCCGcaUgUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 4655 0.74 0.156655
Target:  5'- ---aUGGCCUCGGUGUACACCguccugcGuGCCu -3'
miRNA:   3'- aaccACCGGAGCCGCAUGUGGa------C-CGG- -5'
19255 5' -60.1 NC_004684.1 + 4901 0.68 0.364499
Target:  5'- cUGGUcgccaccGGCCUCGGCGgcaccauCACCgguaaGCCu -3'
miRNA:   3'- aACCA-------CCGGAGCCGCau-----GUGGac---CGG- -5'
19255 5' -60.1 NC_004684.1 + 5033 0.66 0.514008
Target:  5'- -cGGUGGCCaccacGCGUcugGCACCcGGCg -3'
miRNA:   3'- aaCCACCGGagc--CGCA---UGUGGaCCGg -5'
19255 5' -60.1 NC_004684.1 + 5092 0.67 0.436036
Target:  5'- -cGGaGGCCcgcgCGGCGcuggagcaGCGCCUGGaCCu -3'
miRNA:   3'- aaCCaCCGGa---GCCGCa-------UGUGGACC-GG- -5'
19255 5' -60.1 NC_004684.1 + 5418 0.7 0.302949
Target:  5'- -gGGUGGCUcaUGGUGUACACCgacGGUUa -3'
miRNA:   3'- aaCCACCGGa-GCCGCAUGUGGa--CCGG- -5'
19255 5' -60.1 NC_004684.1 + 5451 0.67 0.417621
Target:  5'- -cGGUgcaccaGGCC-CGGCGggUGCCgUGGCCc -3'
miRNA:   3'- aaCCA------CCGGaGCCGCauGUGG-ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 5897 0.67 0.417621
Target:  5'- -gGGUGGCggCGGCGcugaucGCGCacgaccggCUGGCCg -3'
miRNA:   3'- aaCCACCGgaGCCGCa-----UGUG--------GACCGG- -5'
19255 5' -60.1 NC_004684.1 + 6023 0.7 0.274968
Target:  5'- -cGGUGGCCUUuaGGCcgccaGCGCCUcgcGGCCc -3'
miRNA:   3'- aaCCACCGGAG--CCGca---UGUGGA---CCGG- -5'
19255 5' -60.1 NC_004684.1 + 6163 0.68 0.373727
Target:  5'- -cGGcGGCCagcgugCGGCGguagGCACCgGGCa -3'
miRNA:   3'- aaCCaCCGGa-----GCCGCa---UGUGGaCCGg -5'
19255 5' -60.1 NC_004684.1 + 6196 0.69 0.340936
Target:  5'- ----cGGCCa-GGUGUACGCCgaGGCCa -3'
miRNA:   3'- aaccaCCGGagCCGCAUGUGGa-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.