miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19255 5' -60.1 NC_004684.1 + 59436 0.72 0.213545
Target:  5'- cUGGcGGCCUugcccacCGGUGUGCGCC-GGUCg -3'
miRNA:   3'- aACCaCCGGA-------GCCGCAUGUGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 18415 0.74 0.160853
Target:  5'- -cGGcGGCC-CGGCGggcGCACCggcGGCCg -3'
miRNA:   3'- aaCCaCCGGaGCCGCa--UGUGGa--CCGG- -5'
19255 5' -60.1 NC_004684.1 + 55447 0.73 0.169109
Target:  5'- -cGGUGGUCUaugucgccaagcgCGGUGaAgGCCUGGCCg -3'
miRNA:   3'- aaCCACCGGA-------------GCCGCaUgUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 47948 0.73 0.174061
Target:  5'- cUUGGUGGCgUCGGC--ACGgCUGGCg -3'
miRNA:   3'- -AACCACCGgAGCCGcaUGUgGACCGg -5'
19255 5' -60.1 NC_004684.1 + 58002 0.73 0.183395
Target:  5'- -aGGUGuGCCU-GGCGUACuucGCCgaGGCCg -3'
miRNA:   3'- aaCCAC-CGGAgCCGCAUG---UGGa-CCGG- -5'
19255 5' -60.1 NC_004684.1 + 53062 0.73 0.185314
Target:  5'- -cGGUGGUgUccgacucgcugguacCGGCGUACACCUGcGCg -3'
miRNA:   3'- aaCCACCGgA---------------GCCGCAUGUGGAC-CGg -5'
19255 5' -60.1 NC_004684.1 + 12027 0.73 0.188226
Target:  5'- -cGGUGGCCaaggccaugcUCgaccagcaggaGGCGgcuCGCCUGGCCg -3'
miRNA:   3'- aaCCACCGG----------AG-----------CCGCau-GUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 11146 0.73 0.193169
Target:  5'- -aGGUGGUCgcgccgUCGGUGg--ACCUGGCCg -3'
miRNA:   3'- aaCCACCGG------AGCCGCaugUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 1228 0.72 0.198226
Target:  5'- ----cGGCCUCGGCG---GCCUGGUCg -3'
miRNA:   3'- aaccaCCGGAGCCGCaugUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 4655 0.74 0.156655
Target:  5'- ---aUGGCCUCGGUGUACACCguccugcGuGCCu -3'
miRNA:   3'- aaccACCGGAGCCGCAUGUGGa------C-CGG- -5'
19255 5' -60.1 NC_004684.1 + 48969 0.74 0.152556
Target:  5'- -gGGUGGCCggggcgggcgcgUCGGUGccCugCUGGCCg -3'
miRNA:   3'- aaCCACCGG------------AGCCGCauGugGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 25349 0.74 0.152152
Target:  5'- -cGGUGGCCUUGGCGgcgGCcugauggACCcGGUCa -3'
miRNA:   3'- aaCCACCGGAGCCGCa--UG-------UGGaCCGG- -5'
19255 5' -60.1 NC_004684.1 + 26443 0.85 0.023643
Target:  5'- -cGGUGGCC-CGGUGUacggcggcACGCCUGGCCg -3'
miRNA:   3'- aaCCACCGGaGCCGCA--------UGUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 66824 0.82 0.044026
Target:  5'- -cGGUGGCCUCGGCcuuguccuccucgGUGgcggccucgacCGCCUGGCCa -3'
miRNA:   3'- aaCCACCGGAGCCG-------------CAU-----------GUGGACCGG- -5'
19255 5' -60.1 NC_004684.1 + 62966 0.79 0.069156
Target:  5'- aUGGUGGCgugCUCGGUGgugcGCACgUGGCCg -3'
miRNA:   3'- aACCACCG---GAGCCGCa---UGUGgACCGG- -5'
19255 5' -60.1 NC_004684.1 + 64931 0.78 0.083976
Target:  5'- -aGGUGGCggCGGUGaGCGCCUGGCg -3'
miRNA:   3'- aaCCACCGgaGCCGCaUGUGGACCGg -5'
19255 5' -60.1 NC_004684.1 + 60214 0.78 0.086088
Target:  5'- -cGGcguUGGCCUCGGCGUuguagguGCACCcgcaggcggUGGCCa -3'
miRNA:   3'- aaCC---ACCGGAGCCGCA-------UGUGG---------ACCGG- -5'
19255 5' -60.1 NC_004684.1 + 40372 0.77 0.096367
Target:  5'- cUUGGgGGCCUCGGCGgugGCGgCCUucggcaGGCCg -3'
miRNA:   3'- -AACCaCCGGAGCCGCa--UGU-GGA------CCGG- -5'
19255 5' -60.1 NC_004684.1 + 65306 0.74 0.14465
Target:  5'- -cGGcGGCCUCGcUGUGCACCacGGCCa -3'
miRNA:   3'- aaCCaCCGGAGCcGCAUGUGGa-CCGG- -5'
19255 5' -60.1 NC_004684.1 + 53017 0.74 0.14816
Target:  5'- -cGGUGucggucaGCCagUCGGCGUACACCUGcGCg -3'
miRNA:   3'- aaCCAC-------CGG--AGCCGCAUGUGGAC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.