miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 12839 0.69 0.229457
Target:  5'- uGCUGCCGacGUGgUCGCGgaggccgagGCCGCCa- -3'
miRNA:   3'- gCGGCGGC--CACgAGCGCa--------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 12883 0.72 0.134161
Target:  5'- cCGCCGCCGGggaGCcUGCGcucGCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCa--CGaGCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 13282 0.68 0.259321
Target:  5'- gGCCGCCGGUgGCUggUGCGcGCCGUCg- -3'
miRNA:   3'- gCGGCGGCCA-CGA--GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 13934 0.66 0.359653
Target:  5'- cCGuuGCCGGUGCugacacUCGCGggggGCCcUCg- -3'
miRNA:   3'- -GCggCGGCCACG------AGCGCa---CGGuGGau -5'
19256 5' -63.1 NC_004684.1 + 14487 0.66 0.38778
Target:  5'- aCGCCGCC-GUGCUgGCcgGacgcuccugggugcaUGCCACCg- -3'
miRNA:   3'- -GCGGCGGcCACGAgCG--C---------------ACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 16266 0.66 0.384397
Target:  5'- -uUCGUCGGcagaUGCUCGCG-GCCauGCCUGc -3'
miRNA:   3'- gcGGCGGCC----ACGAGCGCaCGG--UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 17641 0.67 0.303501
Target:  5'- cCG-CGCUGGUGCgcuccgugccgaGCGUGCCGCUg- -3'
miRNA:   3'- -GCgGCGGCCACGag----------CGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 17839 0.68 0.253104
Target:  5'- aCGCCGCUGGcaagGUgUGCGUcaccgaccgcacGCCGCCUGa -3'
miRNA:   3'- -GCGGCGGCCa---CGaGCGCA------------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 18328 0.66 0.367776
Target:  5'- cCGCaCGCCGGUGC-CGCccccggaGCCgACCg- -3'
miRNA:   3'- -GCG-GCGGCCACGaGCGca-----CGG-UGGau -5'
19256 5' -63.1 NC_004684.1 + 19271 0.7 0.192577
Target:  5'- uGCCGCCGGaGC-CG-GaGCCACCUGg -3'
miRNA:   3'- gCGGCGGCCaCGaGCgCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 20232 0.72 0.145118
Target:  5'- cCGCCGCuaCGGUGCUCcUGggcaccgggGCCGCCUAc -3'
miRNA:   3'- -GCGGCG--GCCACGAGcGCa--------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 20343 0.68 0.278719
Target:  5'- gCGUCGcCCGGUGCaccgucacCGCGcagGCCACCc- -3'
miRNA:   3'- -GCGGC-GGCCACGa-------GCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 21245 0.66 0.343786
Target:  5'- gGCCGCgaGGUGUUCGUGcGCCAg--- -3'
miRNA:   3'- gCGGCGg-CCACGAGCGCaCGGUggau -5'
19256 5' -63.1 NC_004684.1 + 22007 0.66 0.359653
Target:  5'- gGCCaugggGCCGGUGCUCGC---CgACCUGa -3'
miRNA:   3'- gCGG-----CGGCCACGAGCGcacGgUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 22853 0.68 0.265662
Target:  5'- uGCCGaCCGG-GUUCGUccggGCCACCa- -3'
miRNA:   3'- gCGGC-GGCCaCGAGCGca--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 23212 0.66 0.381872
Target:  5'- gGCCGCCGGUGgcgacggcggguucCUgaaauggcucCGCGacGCCACCa- -3'
miRNA:   3'- gCGGCGGCCAC--------------GA----------GCGCa-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 23220 0.67 0.320943
Target:  5'- gCGCgCGCCGG-GUucaUCGcCGUGCCGCa-- -3'
miRNA:   3'- -GCG-GCGGCCaCG---AGC-GCACGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 23573 0.66 0.343786
Target:  5'- aGCCuGCCGG-GCcgCGCGaacaccGCCGCCg- -3'
miRNA:   3'- gCGG-CGGCCaCGa-GCGCa-----CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 25126 0.68 0.278719
Target:  5'- uGCCcagguGUCGGUcuuGCUCGCGUcCCACCa- -3'
miRNA:   3'- gCGG-----CGGCCA---CGAGCGCAcGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 25439 0.66 0.351656
Target:  5'- uGCCGCUGGccugucggacUGCUcCG-GUGCCAUCa- -3'
miRNA:   3'- gCGGCGGCC----------ACGA-GCgCACGGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.