miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 748 0.71 0.178426
Target:  5'- cCGCCGCCGaG-GCcaUCGUG-GCCACCa- -3'
miRNA:   3'- -GCGGCGGC-CaCG--AGCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 1571 0.76 0.068641
Target:  5'- aGCCGCCGGUGcCUC-CGgGUCACCUGc -3'
miRNA:   3'- gCGGCGGCCAC-GAGcGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 2352 0.66 0.351656
Target:  5'- uGCCGCCcugaGUUCGUG-GCCGCCa- -3'
miRNA:   3'- gCGGCGGcca-CGAGCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 2449 0.66 0.351656
Target:  5'- uCGcCCGCCuGGgcggccaGCUCgGCGUGCCguaccACCUGa -3'
miRNA:   3'- -GC-GGCGG-CCa------CGAG-CGCACGG-----UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 4035 0.69 0.229457
Target:  5'- gGCCGCuCGGUGCgcuggGCG-GUCACCg- -3'
miRNA:   3'- gCGGCG-GCCACGag---CGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 4294 0.67 0.295056
Target:  5'- uGCCGCCGGgucgccguaauguagUGCUUGCacggcggcacgGUaGCCGCCa- -3'
miRNA:   3'- gCGGCGGCC---------------ACGAGCG-----------CA-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 4419 0.68 0.259321
Target:  5'- gGCCGCCGGaacaacgCGCGgGCCugCUGg -3'
miRNA:   3'- gCGGCGGCCacga---GCGCaCGGugGAU- -5'
19256 5' -63.1 NC_004684.1 + 5964 0.67 0.320202
Target:  5'- uGCCGCCGGUGUcccguauuguggUCauguacgGCGggacggacccGCCACCUGa -3'
miRNA:   3'- gCGGCGGCCACG------------AG-------CGCa---------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 7331 0.73 0.130681
Target:  5'- gGCCGCCGG-GC-CGCGcGCCACg-- -3'
miRNA:   3'- gCGGCGGCCaCGaGCGCaCGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 7708 0.67 0.299255
Target:  5'- cCGUCGCCGuGgcgcugGC-CGUGaGCCACCUGa -3'
miRNA:   3'- -GCGGCGGC-Ca-----CGaGCGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 8015 0.66 0.366959
Target:  5'- uGCCGCCGGgcgGUUCcaggacaccgugcGCGUGUucaaCACCa- -3'
miRNA:   3'- gCGGCGGCCa--CGAG-------------CGCACG----GUGGau -5'
19256 5' -63.1 NC_004684.1 + 8132 0.66 0.358044
Target:  5'- aCGaCCGCguCGGUGCUCGgGUGCagcagaucgucaACCa- -3'
miRNA:   3'- -GC-GGCG--GCCACGAGCgCACGg-----------UGGau -5'
19256 5' -63.1 NC_004684.1 + 8957 0.69 0.223844
Target:  5'- uGCCGCCGGUggagauGCUgUGCGaGCCAUCa- -3'
miRNA:   3'- gCGGCGGCCA------CGA-GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 9548 0.67 0.327675
Target:  5'- gCGCCgguuggaGCCGGUGCgcCGCGaacacgugGCCgACCUGa -3'
miRNA:   3'- -GCGG-------CGGCCACGa-GCGCa-------CGG-UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 9665 0.66 0.384397
Target:  5'- uGCCGCCuGg----GCGUGCCACCa- -3'
miRNA:   3'- gCGGCGGcCacgagCGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 9852 0.76 0.078631
Target:  5'- cCGCCGCCGGUGa--GC-UGCCGCCg- -3'
miRNA:   3'- -GCGGCGGCCACgagCGcACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 9972 0.66 0.358848
Target:  5'- aCGCCGCCGGcacaccggucgagUGauaCGCuG-GCCGCCUGg -3'
miRNA:   3'- -GCGGCGGCC-------------ACga-GCG-CaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 10136 0.69 0.229457
Target:  5'- aCGCCGCUGaccucGUGCUCaGCcaGCCGCCg- -3'
miRNA:   3'- -GCGGCGGC-----CACGAG-CGcaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 11154 0.68 0.285437
Target:  5'- gCGCCGUCGGUGgaCcUG-GCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCACgaGcGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 12070 0.67 0.292282
Target:  5'- gGCCGCCgagcgcgacgaGGUGCUggcccgCGCGgcgGCCAUCa- -3'
miRNA:   3'- gCGGCGG-----------CCACGA------GCGCa--CGGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.