miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 20343 0.68 0.278719
Target:  5'- gCGUCGcCCGGUGCaccgucacCGCGcagGCCACCc- -3'
miRNA:   3'- -GCGGC-GGCCACGa-------GCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 8957 0.69 0.223844
Target:  5'- uGCCGCCGGUggagauGCUgUGCGaGCCAUCa- -3'
miRNA:   3'- gCGGCGGCCA------CGA-GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 12839 0.69 0.229457
Target:  5'- uGCUGCCGacGUGgUCGCGgaggccgagGCCGCCa- -3'
miRNA:   3'- gCGGCGGC--CACgAGCGCa--------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 10136 0.69 0.229457
Target:  5'- aCGCCGCUGaccucGUGCUCaGCcaGCCGCCg- -3'
miRNA:   3'- -GCGGCGGC-----CACGAG-CGcaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 17839 0.68 0.253104
Target:  5'- aCGCCGCUGGcaagGUgUGCGUcaccgaccgcacGCCGCCUGa -3'
miRNA:   3'- -GCGGCGGCCa---CGaGCGCA------------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 4419 0.68 0.259321
Target:  5'- gGCCGCCGGaacaacgCGCGgGCCugCUGg -3'
miRNA:   3'- gCGGCGGCCacga---GCGCaCGGugGAU- -5'
19256 5' -63.1 NC_004684.1 + 13282 0.68 0.259321
Target:  5'- gGCCGCCGGUgGCUggUGCGcGCCGUCg- -3'
miRNA:   3'- gCGGCGGCCA-CGA--GCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 26582 0.68 0.265662
Target:  5'- gCGCgCGgCGGUGUgCGCGgguucGCCACCg- -3'
miRNA:   3'- -GCG-GCgGCCACGaGCGCa----CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 57942 0.68 0.272127
Target:  5'- cCGaCCGCCugcGGUGCUCGC-UGCgGCUg- -3'
miRNA:   3'- -GC-GGCGG---CCACGAGCGcACGgUGGau -5'
19256 5' -63.1 NC_004684.1 + 30176 0.69 0.218348
Target:  5'- aCGCCGUCGGcggcgaGCUgGUG-GCCACCa- -3'
miRNA:   3'- -GCGGCGGCCa-----CGAgCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 38101 0.69 0.217805
Target:  5'- cCGCCGUCGGaGUUCGCgGUGCCggagcaaguggagGCCg- -3'
miRNA:   3'- -GCGGCGGCCaCGAGCG-CACGG-------------UGGau -5'
19256 5' -63.1 NC_004684.1 + 19271 0.7 0.192577
Target:  5'- uGCCGCCGGaGC-CG-GaGCCACCUGg -3'
miRNA:   3'- gCGGCGGCCaCGaGCgCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 42633 0.82 0.026858
Target:  5'- cCGCCGCCGGUGCU-G-GUGCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCACGAgCgCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 9852 0.76 0.078631
Target:  5'- cCGCCGCCGGUGa--GC-UGCCGCCg- -3'
miRNA:   3'- -GCGGCGGCCACgagCGcACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 47326 0.74 0.111498
Target:  5'- uGUCGCCGGUGUggGCGUcgagcaugGCCACCa- -3'
miRNA:   3'- gCGGCGGCCACGagCGCA--------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 12883 0.72 0.134161
Target:  5'- cCGCCGCCGGggaGCcUGCGcucGCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCa--CGaGCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 63850 0.71 0.160997
Target:  5'- aCGCUGUCGGUGCcacgugCGCGgugGCgGCCUu -3'
miRNA:   3'- -GCGGCGGCCACGa-----GCGCa--CGgUGGAu -5'
19256 5' -63.1 NC_004684.1 + 59403 0.71 0.160997
Target:  5'- uCGCUGCacuugcaGGUGUUgCGCacGUGCCGCCUGg -3'
miRNA:   3'- -GCGGCGg------CCACGA-GCG--CACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 39670 0.71 0.178426
Target:  5'- cCGCgUGCCucGUGCUCGCGcucgGCCGCCg- -3'
miRNA:   3'- -GCG-GCGGc-CACGAGCGCa---CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 37630 0.7 0.187754
Target:  5'- aCGCCGUCGGUGCgcugGCcaugGCCGCCc- -3'
miRNA:   3'- -GCGGCGGCCACGag--CGca--CGGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.