miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 61457 1.06 0.000362
Target:  5'- uCGCCGCCGGUGCUCGCGUGCCACCUAg -3'
miRNA:   3'- -GCGGCGGCCACGAGCGCACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 42633 0.82 0.026858
Target:  5'- cCGCCGCCGGUGCU-G-GUGCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCACGAgCgCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 48972 0.79 0.041873
Target:  5'- gGCCGCCGGUGCgccCGCcggGCCGCCg- -3'
miRNA:   3'- gCGGCGGCCACGa--GCGca-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 1571 0.76 0.068641
Target:  5'- aGCCGCCGGUGcCUC-CGgGUCACCUGc -3'
miRNA:   3'- gCGGCGGCCAC-GAGcGCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 9852 0.76 0.078631
Target:  5'- cCGCCGCCGGUGa--GC-UGCCGCCg- -3'
miRNA:   3'- -GCGGCGGCCACgagCGcACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 47326 0.74 0.111498
Target:  5'- uGUCGCCGGUGUggGCGUcgagcaugGCCACCa- -3'
miRNA:   3'- gCGGCGGCCACGagCGCA--------CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 7331 0.73 0.130681
Target:  5'- gGCCGCCGG-GC-CGCGcGCCACg-- -3'
miRNA:   3'- gCGGCGGCCaCGaGCGCaCGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 12883 0.72 0.134161
Target:  5'- cCGCCGCCGGggaGCcUGCGcucGCCGCCa- -3'
miRNA:   3'- -GCGGCGGCCa--CGaGCGCa--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 20232 0.72 0.145118
Target:  5'- cCGCCGCuaCGGUGCUCcUGggcaccgggGCCGCCUAc -3'
miRNA:   3'- -GCGGCG--GCCACGAGcGCa--------CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 25785 0.71 0.156887
Target:  5'- gGCCGCCGGa-CUCGUG-GCCgACCUGc -3'
miRNA:   3'- gCGGCGGCCacGAGCGCaCGG-UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 63850 0.71 0.160997
Target:  5'- aCGCUGUCGGUGCcacgugCGCGgugGCgGCCUu -3'
miRNA:   3'- -GCGGCGGCCACGa-----GCGCa--CGgUGGAu -5'
19256 5' -63.1 NC_004684.1 + 59403 0.71 0.160997
Target:  5'- uCGCUGCacuugcaGGUGUUgCGCacGUGCCGCCUGg -3'
miRNA:   3'- -GCGGCGg------CCACGA-GCG--CACGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 39670 0.71 0.178426
Target:  5'- cCGCgUGCCucGUGCUCGCGcucgGCCGCCg- -3'
miRNA:   3'- -GCG-GCGGc-CACGAGCGCa---CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 748 0.71 0.178426
Target:  5'- cCGCCGCCGaG-GCcaUCGUG-GCCACCa- -3'
miRNA:   3'- -GCGGCGGC-CaCG--AGCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 37630 0.7 0.187754
Target:  5'- aCGCCGUCGGUGCgcugGCcaugGCCGCCc- -3'
miRNA:   3'- -GCGGCGGCCACGag--CGca--CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 19271 0.7 0.192577
Target:  5'- uGCCGCCGGaGC-CG-GaGCCACCUGg -3'
miRNA:   3'- gCGGCGGCCaCGaGCgCaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 56590 0.7 0.197509
Target:  5'- aGCCGCCGGaUGC-CGCuacgGUGCCgacGCCg- -3'
miRNA:   3'- gCGGCGGCC-ACGaGCG----CACGG---UGGau -5'
19256 5' -63.1 NC_004684.1 + 55740 0.7 0.20255
Target:  5'- gGCCGCC-GUGCUgGCGUgGCCgauGCCg- -3'
miRNA:   3'- gCGGCGGcCACGAgCGCA-CGG---UGGau -5'
19256 5' -63.1 NC_004684.1 + 48666 0.7 0.207703
Target:  5'- aCGCCGCCacauccaGCgagaGCGUGCCACCg- -3'
miRNA:   3'- -GCGGCGGcca----CGag--CGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 55412 0.7 0.212969
Target:  5'- uGCCGUCGGUGCcgccggUCGCGgUGUgCGCCg- -3'
miRNA:   3'- gCGGCGGCCACG------AGCGC-ACG-GUGGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.