Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19257 | 5' | -57.2 | NC_004684.1 | + | 64099 | 1.07 | 0.001082 |
Target: 5'- gCUCGCGCUGUGCCAUGGCCUCGAACUc -3' miRNA: 3'- -GAGCGCGACACGGUACCGGAGCUUGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 32845 | 0.81 | 0.084741 |
Target: 5'- uCUCGUaGCUG-GCCAUGGCCUCGAcauACa -3' miRNA: 3'- -GAGCG-CGACaCGGUACCGGAGCU---UGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 13062 | 0.78 | 0.13572 |
Target: 5'- -cCGCGCUGUGCUAUGcCCUCGGAa- -3' miRNA: 3'- gaGCGCGACACGGUACcGGAGCUUga -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 5057 | 0.74 | 0.242894 |
Target: 5'- -gCGCGCUGUGCUGgaGGCCUCcGGCg -3' miRNA: 3'- gaGCGCGACACGGUa-CCGGAGcUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 62127 | 0.73 | 0.255527 |
Target: 5'- cCUUGCGCU---UgGUGGCCUCGAACUg -3' miRNA: 3'- -GAGCGCGAcacGgUACCGGAGCUUGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 10346 | 0.72 | 0.303997 |
Target: 5'- -cCGCGCUgGUGCCGUGGCCcacCGuGACc -3' miRNA: 3'- gaGCGCGA-CACGGUACCGGa--GC-UUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 44670 | 0.72 | 0.311472 |
Target: 5'- gUCGCGC-GUGCCAgccacGGCCUUGGccACg -3' miRNA: 3'- gAGCGCGaCACGGUa----CCGGAGCU--UGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 32960 | 0.71 | 0.350925 |
Target: 5'- gCUCGCGCUG-GCCAaccucgccGCCUCGAcGCa -3' miRNA: 3'- -GAGCGCGACaCGGUac------CGGAGCU-UGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 37639 | 0.71 | 0.367671 |
Target: 5'- -gUGCGCUG-GCCAUGGCCgccCGGucagGCa -3' miRNA: 3'- gaGCGCGACaCGGUACCGGa--GCU----UGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 27796 | 0.7 | 0.384957 |
Target: 5'- --aGCGCUGcGUgGUGGCC-CGAGCa -3' miRNA: 3'- gagCGCGACaCGgUACCGGaGCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 33116 | 0.7 | 0.3938 |
Target: 5'- gCUCGCGCUG-GCCAaGGUgCUCGGcauugcGCUg -3' miRNA: 3'- -GAGCGCGACaCGGUaCCG-GAGCU------UGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 64023 | 0.7 | 0.411875 |
Target: 5'- -cCGCGCUugaccucgGUGUCGgcggugucGGCCUCGAACa -3' miRNA: 3'- gaGCGCGA--------CACGGUa-------CCGGAGCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 64403 | 0.7 | 0.411875 |
Target: 5'- --gGCGCg--GUgAUGGCCUCGAACc -3' miRNA: 3'- gagCGCGacaCGgUACCGGAGCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 55548 | 0.7 | 0.430455 |
Target: 5'- aCUCGCGCcgcUGgccGCCGUGGCC-CGGu-- -3' miRNA: 3'- -GAGCGCG---ACa--CGGUACCGGaGCUuga -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 12174 | 0.7 | 0.430455 |
Target: 5'- -gCGCGCgGUGCCAacGCCUCGuaGGCa -3' miRNA: 3'- gaGCGCGaCACGGUacCGGAGC--UUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 25871 | 0.69 | 0.449517 |
Target: 5'- --aGCuGCgGUGCCAgGGCCUCGuAGCg -3' miRNA: 3'- gagCG-CGaCACGGUaCCGGAGC-UUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 32917 | 0.69 | 0.449517 |
Target: 5'- cCUCG-GCgGUGCCGgaccggGuGCCUCGGGCa -3' miRNA: 3'- -GAGCgCGaCACGGUa-----C-CGGAGCUUGa -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 35881 | 0.68 | 0.499099 |
Target: 5'- uUCGCGCgg-GCCGUGGuCCcCGAcACUg -3' miRNA: 3'- gAGCGCGacaCGGUACC-GGaGCU-UGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 33691 | 0.68 | 0.508286 |
Target: 5'- -cCGCGCUGgacacccucGCCAgcggcagcggcggUGGCC-CGAACUa -3' miRNA: 3'- gaGCGCGACa--------CGGU-------------ACCGGaGCUUGA- -5' |
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19257 | 5' | -57.2 | NC_004684.1 | + | 60542 | 0.68 | 0.509311 |
Target: 5'- -cCGCGCccgGUGCCGUcgacacCCUCGAACUc -3' miRNA: 3'- gaGCGCGa--CACGGUAcc----GGAGCUUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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