miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19257 5' -57.2 NC_004684.1 + 2164 0.67 0.582878
Target:  5'- aCUCgGCGUUGacgGUCAUGGCCcgCGAGgUg -3'
miRNA:   3'- -GAG-CGCGACa--CGGUACCGGa-GCUUgA- -5'
19257 5' -57.2 NC_004684.1 + 3875 0.67 0.604361
Target:  5'- -cUGCGCaGUGCCAaGGCCUgGucaGACa -3'
miRNA:   3'- gaGCGCGaCACGGUaCCGGAgC---UUGa -5'
19257 5' -57.2 NC_004684.1 + 5057 0.74 0.242894
Target:  5'- -gCGCGCUGUGCUGgaGGCCUCcGGCg -3'
miRNA:   3'- gaGCGCGACACGGUa-CCGGAGcUUGa -5'
19257 5' -57.2 NC_004684.1 + 5933 0.67 0.597904
Target:  5'- -cCGCGCUG-GCCAccgggcgguccaaccUGGCCgcgccggUGAGCg -3'
miRNA:   3'- gaGCGCGACaCGGU---------------ACCGGa------GCUUGa -5'
19257 5' -57.2 NC_004684.1 + 6072 0.68 0.540444
Target:  5'- -cCGCGCUGguagccgaUGCCGggggcGGCCUCGuaAACg -3'
miRNA:   3'- gaGCGCGAC--------ACGGUa----CCGGAGC--UUGa -5'
19257 5' -57.2 NC_004684.1 + 8597 0.67 0.604361
Target:  5'- -aCGCGC----CgGUGGCCUCGAACa -3'
miRNA:   3'- gaGCGCGacacGgUACCGGAGCUUGa -5'
19257 5' -57.2 NC_004684.1 + 10346 0.72 0.303997
Target:  5'- -cCGCGCUgGUGCCGUGGCCcacCGuGACc -3'
miRNA:   3'- gaGCGCGA-CACGGUACCGGa--GC-UUGa -5'
19257 5' -57.2 NC_004684.1 + 12174 0.7 0.430455
Target:  5'- -gCGCGCgGUGCCAacGCCUCGuaGGCa -3'
miRNA:   3'- gaGCGCGaCACGGUacCGGAGC--UUGa -5'
19257 5' -57.2 NC_004684.1 + 13062 0.78 0.13572
Target:  5'- -cCGCGCUGUGCUAUGcCCUCGGAa- -3'
miRNA:   3'- gaGCGCGACACGGUACcGGAGCUUga -5'
19257 5' -57.2 NC_004684.1 + 14915 0.66 0.623777
Target:  5'- -aCGCGCUGgaggugguggcgGCCAU-GCCgUCGGGCa -3'
miRNA:   3'- gaGCGCGACa-----------CGGUAcCGG-AGCUUGa -5'
19257 5' -57.2 NC_004684.1 + 19550 0.67 0.593604
Target:  5'- uUCGCGCUacGUGCCGUcaggcgGGUCcgaCGAGCa -3'
miRNA:   3'- gAGCGCGA--CACGGUA------CCGGa--GCUUGa -5'
19257 5' -57.2 NC_004684.1 + 24898 0.67 0.572191
Target:  5'- aUCGCGUUG-GCC-UGGUCgUUGGACa -3'
miRNA:   3'- gAGCGCGACaCGGuACCGG-AGCUUGa -5'
19257 5' -57.2 NC_004684.1 + 25871 0.69 0.449517
Target:  5'- --aGCuGCgGUGCCAgGGCCUCGuAGCg -3'
miRNA:   3'- gagCG-CGaCACGGUaCCGGAGC-UUGa -5'
19257 5' -57.2 NC_004684.1 + 27115 0.66 0.669074
Target:  5'- uUUGCGCUG-GCCGUuGCCg-GGACg -3'
miRNA:   3'- gAGCGCGACaCGGUAcCGGagCUUGa -5'
19257 5' -57.2 NC_004684.1 + 27796 0.7 0.384957
Target:  5'- --aGCGCUGcGUgGUGGCC-CGAGCa -3'
miRNA:   3'- gagCGCGACaCGgUACCGGaGCUUGa -5'
19257 5' -57.2 NC_004684.1 + 32845 0.81 0.084741
Target:  5'- uCUCGUaGCUG-GCCAUGGCCUCGAcauACa -3'
miRNA:   3'- -GAGCG-CGACaCGGUACCGGAGCU---UGa -5'
19257 5' -57.2 NC_004684.1 + 32917 0.69 0.449517
Target:  5'- cCUCG-GCgGUGCCGgaccggGuGCCUCGGGCa -3'
miRNA:   3'- -GAGCgCGaCACGGUa-----C-CGGAGCUUGa -5'
19257 5' -57.2 NC_004684.1 + 32960 0.71 0.350925
Target:  5'- gCUCGCGCUG-GCCAaccucgccGCCUCGAcGCa -3'
miRNA:   3'- -GAGCGCGACaCGGUac------CGGAGCU-UGa -5'
19257 5' -57.2 NC_004684.1 + 33116 0.7 0.3938
Target:  5'- gCUCGCGCUG-GCCAaGGUgCUCGGcauugcGCUg -3'
miRNA:   3'- -GAGCGCGACaCGGUaCCG-GAGCU------UGA- -5'
19257 5' -57.2 NC_004684.1 + 33691 0.68 0.508286
Target:  5'- -cCGCGCUGgacacccucGCCAgcggcagcggcggUGGCC-CGAACUa -3'
miRNA:   3'- gaGCGCGACa--------CGGU-------------ACCGGaGCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.