miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19258 3' -63.2 NC_004684.1 + 2045 0.67 0.313585
Target:  5'- gUGGCccuGggGGCCgccaucgUGGCCugccuGGCGCUGg -3'
miRNA:   3'- uGCCG---CaaCCGGa------GCCGGu----CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 18394 0.67 0.313585
Target:  5'- aGCGGgGUcgGGCC-CGGCCAGcagggcaccgacGCGCc- -3'
miRNA:   3'- -UGCCgCAa-CCGGaGCCGGUC------------CGCGac -5'
19258 3' -63.2 NC_004684.1 + 65679 0.67 0.306356
Target:  5'- cGCGGCacUGGCCggugcCuGCCAGGUGCa- -3'
miRNA:   3'- -UGCCGcaACCGGa----GcCGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 11833 0.67 0.306356
Target:  5'- cCGGCcaccgGGCCacggCGGCCAgcGGCGCg- -3'
miRNA:   3'- uGCCGcaa--CCGGa---GCCGGU--CCGCGac -5'
19258 3' -63.2 NC_004684.1 + 50929 0.67 0.306356
Target:  5'- cCGGacaGcccGGCCUCGuCCAGGCGCa- -3'
miRNA:   3'- uGCCg--Caa-CCGGAGCcGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 25335 0.67 0.306356
Target:  5'- uAUGGCGgccuccccggUGGCCUUGGCgGcGGC-CUGa -3'
miRNA:   3'- -UGCCGCa---------ACCGGAGCCGgU-CCGcGAC- -5'
19258 3' -63.2 NC_004684.1 + 63136 0.67 0.304213
Target:  5'- gAUGGUGguggUGGCCgagugCGGCuccugcgcgccgcgCAGGCGCa- -3'
miRNA:   3'- -UGCCGCa---ACCGGa----GCCG--------------GUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 53164 0.67 0.299255
Target:  5'- cCGGCGUgaaGGCCUcCGGggaCAGGCcgaccgcgccGCUGg -3'
miRNA:   3'- uGCCGCAa--CCGGA-GCCg--GUCCG----------CGAC- -5'
19258 3' -63.2 NC_004684.1 + 45227 0.67 0.299255
Target:  5'- uGCGGCGcUUGGUgcUGGUCAGGCccggcagccagcGCUGg -3'
miRNA:   3'- -UGCCGC-AACCGgaGCCGGUCCG------------CGAC- -5'
19258 3' -63.2 NC_004684.1 + 55750 0.67 0.299255
Target:  5'- cUGGCG-UGGCCgaugccgaCGGUCAGGCGg-- -3'
miRNA:   3'- uGCCGCaACCGGa-------GCCGGUCCGCgac -5'
19258 3' -63.2 NC_004684.1 + 25305 0.67 0.292282
Target:  5'- gGCGGCGgcGGUUcgUCGGCCcuggcGGCGUa- -3'
miRNA:   3'- -UGCCGCaaCCGG--AGCCGGu----CCGCGac -5'
19258 3' -63.2 NC_004684.1 + 54468 0.67 0.292282
Target:  5'- gGCGGCGaagUUGGCCgaCGGCgCAccGGCaccGCUGg -3'
miRNA:   3'- -UGCCGC---AACCGGa-GCCG-GU--CCG---CGAC- -5'
19258 3' -63.2 NC_004684.1 + 1211 0.68 0.285437
Target:  5'- cGCGGCGUcgacuucgucGGCCUCGGC--GGC-CUGg -3'
miRNA:   3'- -UGCCGCAa---------CCGGAGCCGguCCGcGAC- -5'
19258 3' -63.2 NC_004684.1 + 38827 0.68 0.285437
Target:  5'- gGCGGUGcccgacGGCCUggUGGCCcuGGCGCUc -3'
miRNA:   3'- -UGCCGCaa----CCGGA--GCCGGu-CCGCGAc -5'
19258 3' -63.2 NC_004684.1 + 11728 0.68 0.285437
Target:  5'- -gGGCGUUGGUC-CGGgUAGGCGa-- -3'
miRNA:   3'- ugCCGCAACCGGaGCCgGUCCGCgac -5'
19258 3' -63.2 NC_004684.1 + 46097 0.68 0.278719
Target:  5'- cGCcuGCGUUGcGCagauaCGGCCGGGCGCg- -3'
miRNA:   3'- -UGc-CGCAAC-CGga---GCCGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 11447 0.68 0.278719
Target:  5'- cGCGGCGUcGGCgUCGGCCu--CGCc- -3'
miRNA:   3'- -UGCCGCAaCCGgAGCCGGuccGCGac -5'
19258 3' -63.2 NC_004684.1 + 58393 0.68 0.278719
Target:  5'- cGCGcGUGgaGGCCUUGGCCcGGcCGCc- -3'
miRNA:   3'- -UGC-CGCaaCCGGAGCCGGuCC-GCGac -5'
19258 3' -63.2 NC_004684.1 + 10053 0.68 0.272127
Target:  5'- gGCGGgGUcuuuugucugugUGGCCUaCGGCCAGucgaccgggcaGgGCUGg -3'
miRNA:   3'- -UGCCgCA------------ACCGGA-GCCGGUC-----------CgCGAC- -5'
19258 3' -63.2 NC_004684.1 + 49725 0.68 0.272127
Target:  5'- cGCGGCGUUcaaacucagcGGCacgCUCGGCaCGGaGCGCa- -3'
miRNA:   3'- -UGCCGCAA----------CCG---GAGCCG-GUC-CGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.