Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19259 | 5' | -56.4 | NC_004684.1 | + | 27434 | 0.67 | 0.638133 |
Target: 5'- uGGUggCGgcaUUGGAGCGcGgUGCCACCa -3' miRNA: 3'- -CCGgaGCaa-GACCUUGC-CgACGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 4863 | 0.67 | 0.63492 |
Target: 5'- aGGUCUCGgagUGGuccauugaaGGCGGCUcaggcggccuggucGCCACCg -3' miRNA: 3'- -CCGGAGCaagACC---------UUGCCGA--------------CGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 26836 | 0.68 | 0.627424 |
Target: 5'- gGGCUUCGcccagcucCUGGAggucGCGGaggucGCCACCg -3' miRNA: 3'- -CCGGAGCaa------GACCU----UGCCga---CGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 4459 | 0.68 | 0.616719 |
Target: 5'- cGCCgCGcgCUGGu-CGGCUucGUCACCg -3' miRNA: 3'- cCGGaGCaaGACCuuGCCGA--CGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 51489 | 0.68 | 0.616719 |
Target: 5'- aGGCCUCugccgGGAcgcccuGCGGCUGCacaggGCCg -3' miRNA: 3'- -CCGGAGcaagaCCU------UGCCGACGg----UGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 54530 | 0.68 | 0.616719 |
Target: 5'- cGGCCUCGgc--GGuGGCGGCcucgGCCuCCg -3' miRNA: 3'- -CCGGAGCaagaCC-UUGCCGa---CGGuGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 49122 | 0.68 | 0.616719 |
Target: 5'- cGGCgUCGgcCUGGAACGuaccGUCGCCg -3' miRNA: 3'- -CCGgAGCaaGACCUUGCcga-CGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 11944 | 0.68 | 0.606027 |
Target: 5'- uGGCCauggUCGccagcCUGGcaccuGCGGC-GCCACCg -3' miRNA: 3'- -CCGG----AGCaa---GACCu----UGCCGaCGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 14467 | 0.68 | 0.606027 |
Target: 5'- cGCCUgc--CUGGAauGCGGCcacGCCGCCg -3' miRNA: 3'- cCGGAgcaaGACCU--UGCCGa--CGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 60050 | 0.68 | 0.606027 |
Target: 5'- aGGCCUCGcacUCgUGGcgcGCGGCccgGCgGCCc -3' miRNA: 3'- -CCGGAGCa--AG-ACCu--UGCCGa--CGgUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 1385 | 0.68 | 0.57411 |
Target: 5'- aGCUcCGgg-UGGGGCGGCgGCUACCg -3' miRNA: 3'- cCGGaGCaagACCUUGCCGaCGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 47240 | 0.68 | 0.57411 |
Target: 5'- cGCCUCGggCgcgagGGuAGCGGCUGCgCGg- -3' miRNA: 3'- cCGGAGCaaGa----CC-UUGCCGACG-GUgg -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 15667 | 0.68 | 0.57411 |
Target: 5'- aGGCCUCuccaacgUCgUGGccAGCGGCggcaccgacGCCACCg -3' miRNA: 3'- -CCGGAGca-----AG-ACC--UUGCCGa--------CGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 25884 | 0.69 | 0.563551 |
Target: 5'- gGGCCUCGUagcgggccaUGGAcaccCGGUUGuCCAUCa -3' miRNA: 3'- -CCGGAGCAag-------ACCUu---GCCGAC-GGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 34147 | 0.69 | 0.563551 |
Target: 5'- cGCCUCGggC-GGcACGGUgcUGCuCACCg -3' miRNA: 3'- cCGGAGCaaGaCCuUGCCG--ACG-GUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 55353 | 0.69 | 0.553045 |
Target: 5'- cGCCUCcugCUGGucgagcAUGGCcuugGCCACCg -3' miRNA: 3'- cCGGAGcaaGACCu-----UGCCGa---CGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 1228 | 0.69 | 0.553044 |
Target: 5'- cGGCCUCGgcggcCUGGu-CGGUcGCCcgGCCc -3' miRNA: 3'- -CCGGAGCaa---GACCuuGCCGaCGG--UGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 27956 | 0.69 | 0.532216 |
Target: 5'- cGCCUCGgcCUGGGgccACGGUccuUGUCGCg -3' miRNA: 3'- cCGGAGCaaGACCU---UGCCG---ACGGUGg -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 65430 | 0.69 | 0.532216 |
Target: 5'- aGGCgCU-GcgCUGGcguGCGGCgcgcgGCCACCg -3' miRNA: 3'- -CCG-GAgCaaGACCu--UGCCGa----CGGUGG- -5' |
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19259 | 5' | -56.4 | NC_004684.1 | + | 60220 | 0.7 | 0.511677 |
Target: 5'- uGGCCUCGgcgUUguaGGugcacccgcaGGCGGUgGCCACCu -3' miRNA: 3'- -CCGGAGCa--AGa--CC----------UUGCCGaCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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