miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19260 5' -54.2 NC_004684.1 + 11173 0.66 0.842627
Target:  5'- aCCGCcugcauGCGCCGCUCCCAc-AGCg -3'
miRNA:   3'- -GGUGucuu--UGCGGCGAGGGUccUUGg -5'
19260 5' -54.2 NC_004684.1 + 12430 0.68 0.758036
Target:  5'- aCCGCAGAGAgcgaccgucugGCUGCgggCCgGGGAGCa -3'
miRNA:   3'- -GGUGUCUUUg----------CGGCGa--GGgUCCUUGg -5'
19260 5' -54.2 NC_004684.1 + 12873 0.71 0.534654
Target:  5'- aCCGCcGAG--GCCGCcgCCgGGGAGCCu -3'
miRNA:   3'- -GGUGuCUUugCGGCGa-GGgUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 13099 0.69 0.652608
Target:  5'- gCGCGGugcACGCCGC-CCCAccGGCCa -3'
miRNA:   3'- gGUGUCuu-UGCGGCGaGGGUccUUGG- -5'
19260 5' -54.2 NC_004684.1 + 14230 0.72 0.503588
Target:  5'- cCC-CGGAGgccuucACGCCGgaCCCGGuGGACCc -3'
miRNA:   3'- -GGuGUCUU------UGCGGCgaGGGUC-CUUGG- -5'
19260 5' -54.2 NC_004684.1 + 14405 0.66 0.849408
Target:  5'- gCCGCAgGAGAUGCUGCgcgaacugcuggCCaAGGggUCa -3'
miRNA:   3'- -GGUGU-CUUUGCGGCGa-----------GGgUCCuuGG- -5'
19260 5' -54.2 NC_004684.1 + 15917 0.73 0.473331
Target:  5'- uCCGCAGGu-CGCCa-UCCUGGGGGCCu -3'
miRNA:   3'- -GGUGUCUuuGCGGcgAGGGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 17201 0.73 0.444016
Target:  5'- gCCgACGGcAACGUCGUgcggCCCAaGGGACCg -3'
miRNA:   3'- -GG-UGUCuUUGCGGCGa---GGGU-CCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 17541 0.67 0.776992
Target:  5'- gCCGCuacgugcuGAuccCGCCGUccucgcgUCCCgAGGGACCg -3'
miRNA:   3'- -GGUGu-------CUuu-GCGGCG-------AGGG-UCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 17744 0.66 0.851081
Target:  5'- uCCACGccGugGUCgguGCUCCU-GGAGCCg -3'
miRNA:   3'- -GGUGUcuUugCGG---CGAGGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 18140 0.68 0.716751
Target:  5'- aCAUGGAcGCGCCGCUgUgGGGcgacguGCCg -3'
miRNA:   3'- gGUGUCUuUGCGGCGAgGgUCCu-----UGG- -5'
19260 5' -54.2 NC_004684.1 + 18327 0.7 0.62015
Target:  5'- uCCGCAcgccggUGCCGC-CCCcGGAGCCg -3'
miRNA:   3'- -GGUGUcuuu--GCGGCGaGGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 18865 0.68 0.747875
Target:  5'- -gACcGGGugGCCGCaCUCAGGGcACCa -3'
miRNA:   3'- ggUGuCUUugCGGCGaGGGUCCU-UGG- -5'
19260 5' -54.2 NC_004684.1 + 19237 0.66 0.842627
Target:  5'- aCugGGAGccGCGCaaCGCUCCCAucaucaccGGGCCg -3'
miRNA:   3'- gGugUCUU--UGCG--GCGAGGGUc-------CUUGG- -5'
19260 5' -54.2 NC_004684.1 + 19473 0.66 0.816019
Target:  5'- cCCGCGcGAcAUG-CGC-CCCuGGAGCCa -3'
miRNA:   3'- -GGUGU-CUuUGCgGCGaGGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 20231 0.69 0.6849
Target:  5'- gCCGCcGcuACGgUGCUCCUGGGcACCg -3'
miRNA:   3'- -GGUGuCuuUGCgGCGAGGGUCCuUGG- -5'
19260 5' -54.2 NC_004684.1 + 20270 0.69 0.706201
Target:  5'- gCCACcGAGGCGCaCGCUCUgccGGACCc -3'
miRNA:   3'- -GGUGuCUUUGCG-GCGAGGgucCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 20556 0.67 0.772051
Target:  5'- gCCGCAGcuGAGCGCCgguugccgacaguguGCgcacgCCaCGGGGACUa -3'
miRNA:   3'- -GGUGUC--UUUGCGG---------------CGa----GG-GUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 21154 0.66 0.825088
Target:  5'- gCACGcGAAauACGCCGCagcugUCCacgaGGGGACUc -3'
miRNA:   3'- gGUGU-CUU--UGCGGCG-----AGGg---UCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 21757 0.67 0.777976
Target:  5'- gCCGCGcGcuGCGCCuGUUCCCcGGcaaGACCg -3'
miRNA:   3'- -GGUGU-CuuUGCGG-CGAGGGuCC---UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.