miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19260 5' -54.2 NC_004684.1 + 149 0.71 0.555737
Target:  5'- gCC-CGGAAACGCCGgUCgaaCCGGuGACCg -3'
miRNA:   3'- -GGuGUCUUUGCGGCgAG---GGUCcUUGG- -5'
19260 5' -54.2 NC_004684.1 + 987 0.69 0.69558
Target:  5'- -gACGGAccCGCCGC-CCgAGGAggacACCa -3'
miRNA:   3'- ggUGUCUuuGCGGCGaGGgUCCU----UGG- -5'
19260 5' -54.2 NC_004684.1 + 1655 0.69 0.6849
Target:  5'- cCCAaguGggGCcaGCuCGaCUCCCuGGAACCg -3'
miRNA:   3'- -GGUgu-CuuUG--CG-GC-GAGGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 1711 0.68 0.727221
Target:  5'- gCGCaAGAAGCGCCuGCUggcgcaggCCUAcucGGGACCg -3'
miRNA:   3'- gGUG-UCUUUGCGG-CGA--------GGGU---CCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 2092 0.73 0.453676
Target:  5'- gCACAGcGAgGCCGCcgucgcguUCUgGGGAACCg -3'
miRNA:   3'- gGUGUCuUUgCGGCG--------AGGgUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 3168 0.67 0.777976
Target:  5'- gCCG-AGGccAACGCCGUgUCCCAGGugUCg -3'
miRNA:   3'- -GGUgUCU--UUGCGGCG-AGGGUCCuuGG- -5'
19260 5' -54.2 NC_004684.1 + 3855 0.67 0.768074
Target:  5'- aCCACAccGAAggcACGCCGCUgCgCAGu-GCCa -3'
miRNA:   3'- -GGUGU--CUU---UGCGGCGAgG-GUCcuUGG- -5'
19260 5' -54.2 NC_004684.1 + 4110 0.67 0.797331
Target:  5'- gCAgGGAuACGCCcggcgGCUCcagguCCAGGAGCg -3'
miRNA:   3'- gGUgUCUuUGCGG-----CGAG-----GGUCCUUGg -5'
19260 5' -54.2 NC_004684.1 + 4220 0.66 0.816019
Target:  5'- gCCACGacugcauGCGCCuGCgcggcgCgCAGGAGCCg -3'
miRNA:   3'- -GGUGUcuu----UGCGG-CGa-----GgGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 4265 0.68 0.747875
Target:  5'- cCgGCGGAAugGCCuCUaCCCGGaGAcaauGCCg -3'
miRNA:   3'- -GgUGUCUUugCGGcGA-GGGUC-CU----UGG- -5'
19260 5' -54.2 NC_004684.1 + 5724 0.69 0.674171
Target:  5'- gCCGCAGA--UGCCGUUCgCCAuccacaaguGGAcgGCCa -3'
miRNA:   3'- -GGUGUCUuuGCGGCGAG-GGU---------CCU--UGG- -5'
19260 5' -54.2 NC_004684.1 + 6808 0.69 0.674171
Target:  5'- gCCACuacGACGCCGUcggCCUggAGGAGCUg -3'
miRNA:   3'- -GGUGucuUUGCGGCGa--GGG--UCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 7855 0.66 0.816019
Target:  5'- aCGCAucguuCGCCG-UCCCAagucGGAACCg -3'
miRNA:   3'- gGUGUcuuu-GCGGCgAGGGU----CCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 7879 0.66 0.842627
Target:  5'- gCGCAGGccuacGACGCgcccggUGCUCCguuGGGGCCg -3'
miRNA:   3'- gGUGUCU-----UUGCG------GCGAGGgu-CCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 8430 0.66 0.851081
Target:  5'- cCCGCGcgccCGCCGggCCaGGGAACCu -3'
miRNA:   3'- -GGUGUcuuuGCGGCgaGGgUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 9285 0.68 0.726178
Target:  5'- uUCGCGGAcccggccaugcucGGCG-CGCUCCCGGucGAGCUg -3'
miRNA:   3'- -GGUGUCU-------------UUGCgGCGAGGGUC--CUUGG- -5'
19260 5' -54.2 NC_004684.1 + 9577 0.67 0.806764
Target:  5'- aCCGCcGGGACcagGCCGUggucggguUCCCAGGucuuGGCCc -3'
miRNA:   3'- -GGUGuCUUUG---CGGCG--------AGGGUCC----UUGG- -5'
19260 5' -54.2 NC_004684.1 + 9720 0.67 0.777976
Target:  5'- uCCugAu-GugGCCGCUaCCCGGuGAGuCCa -3'
miRNA:   3'- -GGugUcuUugCGGCGA-GGGUC-CUU-GG- -5'
19260 5' -54.2 NC_004684.1 + 9868 0.69 0.663403
Target:  5'- gCCGcCGGAucccGACGCCGCg--CAGGAGCa -3'
miRNA:   3'- -GGU-GUCU----UUGCGGCGaggGUCCUUGg -5'
19260 5' -54.2 NC_004684.1 + 10441 0.67 0.776992
Target:  5'- uCCACGcuguGCGCCGUgcaccagUCCCGGGcGCg -3'
miRNA:   3'- -GGUGUcuu-UGCGGCG-------AGGGUCCuUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.