miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19260 5' -54.2 NC_004684.1 + 22674 0.69 0.6849
Target:  5'- gCCGCAGAAGCGCUcaaggacaugGC-CCCGGcGGCg -3'
miRNA:   3'- -GGUGUCUUUGCGG----------CGaGGGUCcUUGg -5'
19260 5' -54.2 NC_004684.1 + 65344 0.7 0.641794
Target:  5'- gCCACG--AugGCgGCcCCCAGGGccACCa -3'
miRNA:   3'- -GGUGUcuUugCGgCGaGGGUCCU--UGG- -5'
19260 5' -54.2 NC_004684.1 + 50030 0.69 0.652608
Target:  5'- gCgGCAGcGugGCCggugccugGCUCcaggCCAGGAACCg -3'
miRNA:   3'- -GgUGUCuUugCGG--------CGAG----GGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 13099 0.69 0.652608
Target:  5'- gCGCGGugcACGCCGC-CCCAccGGCCa -3'
miRNA:   3'- gGUGUCuu-UGCGGCGaGGGUccUUGG- -5'
19260 5' -54.2 NC_004684.1 + 48143 0.69 0.659088
Target:  5'- cCCGguGAugaugggagcguuGCGCgGCUCCCAGuuGACCa -3'
miRNA:   3'- -GGUguCUu------------UGCGgCGAGGGUCc-UUGG- -5'
19260 5' -54.2 NC_004684.1 + 9868 0.69 0.663403
Target:  5'- gCCGcCGGAucccGACGCCGCg--CAGGAGCa -3'
miRNA:   3'- -GGU-GUCU----UUGCGGCGaggGUCCUUGg -5'
19260 5' -54.2 NC_004684.1 + 5724 0.69 0.674171
Target:  5'- gCCGCAGA--UGCCGUUCgCCAuccacaaguGGAcgGCCa -3'
miRNA:   3'- -GGUGUCUuuGCGGCGAG-GGU---------CCU--UGG- -5'
19260 5' -54.2 NC_004684.1 + 6808 0.69 0.674171
Target:  5'- gCCACuacGACGCCGUcggCCUggAGGAGCUg -3'
miRNA:   3'- -GGUGucuUUGCGGCGa--GGG--UCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 1655 0.69 0.6849
Target:  5'- cCCAaguGggGCcaGCuCGaCUCCCuGGAACCg -3'
miRNA:   3'- -GGUgu-CuuUG--CG-GC-GAGGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 37352 0.7 0.640712
Target:  5'- aCCGacCGGcGAGCGCgcguucaCGCUCagCCAGGAGCCg -3'
miRNA:   3'- -GGU--GUC-UUUGCG-------GCGAG--GGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 39487 0.7 0.638548
Target:  5'- aCCACGGucuuGCGCUGCUUCUccuuggccaugcacGGGAuaauACCg -3'
miRNA:   3'- -GGUGUCuu--UGCGGCGAGGG--------------UCCU----UGG- -5'
19260 5' -54.2 NC_004684.1 + 18327 0.7 0.62015
Target:  5'- uCCGCAcgccggUGCCGC-CCCcGGAGCCg -3'
miRNA:   3'- -GGUGUcuuu--GCGGCGaGGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 46054 0.73 0.453676
Target:  5'- gCACGGucuUGCCGCgcggcuggaCCAGGAACCc -3'
miRNA:   3'- gGUGUCuuuGCGGCGag-------GGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 60525 0.72 0.483318
Target:  5'- aCCGCAGGcugaucuCGCCGCgCCCGGu-GCCg -3'
miRNA:   3'- -GGUGUCUuu-----GCGGCGaGGGUCcuUGG- -5'
19260 5' -54.2 NC_004684.1 + 12873 0.71 0.534654
Target:  5'- aCCGCcGAG--GCCGCcgCCgGGGAGCCu -3'
miRNA:   3'- -GGUGuCUUugCGGCGa-GGgUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 149 0.71 0.555737
Target:  5'- gCC-CGGAAACGCCGgUCgaaCCGGuGACCg -3'
miRNA:   3'- -GGuGUCUUUGCGGCgAG---GGUCcUUGG- -5'
19260 5' -54.2 NC_004684.1 + 52645 0.71 0.577054
Target:  5'- aUCACcGgcAUGCuugCGCUCCCAGGuGGCCa -3'
miRNA:   3'- -GGUGuCuuUGCG---GCGAGGGUCC-UUGG- -5'
19260 5' -54.2 NC_004684.1 + 60242 0.71 0.587783
Target:  5'- cCCGCAGGcgGugGCCacCUUCCGGGuguACCu -3'
miRNA:   3'- -GGUGUCU--UugCGGc-GAGGGUCCu--UGG- -5'
19260 5' -54.2 NC_004684.1 + 56723 0.7 0.609339
Target:  5'- -gGCGGugcuGAUGCCGCgCCagcaCGGGAACCg -3'
miRNA:   3'- ggUGUCu---UUGCGGCGaGG----GUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 55541 0.7 0.609339
Target:  5'- aCCAC-GAAcucGCGCCGCUggccgccguggCCCGGuGGCCg -3'
miRNA:   3'- -GGUGuCUU---UGCGGCGA-----------GGGUCcUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.