miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19260 5' -54.2 NC_004684.1 + 65249 1.13 0.00102
Target:  5'- gCCACAGAAACGCCGCUCCCAGGAACCc -3'
miRNA:   3'- -GGUGUCUUUGCGGCGAGGGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 39014 0.79 0.204645
Target:  5'- gCgAgAGGAugGCCaGCUCCCAGGAcACCc -3'
miRNA:   3'- -GgUgUCUUugCGG-CGAGGGUCCU-UGG- -5'
19260 5' -54.2 NC_004684.1 + 62026 0.76 0.306924
Target:  5'- uCCGguGAGACGCCGgUCCUc-GAACCa -3'
miRNA:   3'- -GGUguCUUUGCGGCgAGGGucCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 51863 0.76 0.322155
Target:  5'- aCGCGGAucAGCGCCuccagcgcccgGC-CCCGGGGGCCu -3'
miRNA:   3'- gGUGUCU--UUGCGG-----------CGaGGGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 33830 0.74 0.379828
Target:  5'- aCCACGGGaugucGACGCCGCgCCucaaCAGGAcgguGCCg -3'
miRNA:   3'- -GGUGUCU-----UUGCGGCGaGG----GUCCU----UGG- -5'
19260 5' -54.2 NC_004684.1 + 51110 0.73 0.444016
Target:  5'- aCAguGAAGCGCCGCgucgggCCCGGcgcGAACa -3'
miRNA:   3'- gGUguCUUUGCGGCGa-----GGGUC---CUUGg -5'
19260 5' -54.2 NC_004684.1 + 17201 0.73 0.444016
Target:  5'- gCCgACGGcAACGUCGUgcggCCCAaGGGACCg -3'
miRNA:   3'- -GG-UGUCuUUGCGGCGa---GGGU-CCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 2092 0.73 0.453676
Target:  5'- gCACAGcGAgGCCGCcgucgcguUCUgGGGAACCg -3'
miRNA:   3'- gGUGUCuUUgCGGCG--------AGGgUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 46054 0.73 0.453676
Target:  5'- gCACGGucuUGCCGCgcggcuggaCCAGGAACCc -3'
miRNA:   3'- gGUGUCuuuGCGGCGag-------GGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 15917 0.73 0.473331
Target:  5'- uCCGCAGGu-CGCCa-UCCUGGGGGCCu -3'
miRNA:   3'- -GGUGUCUuuGCGGcgAGGGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 60525 0.72 0.483318
Target:  5'- aCCGCAGGcugaucuCGCCGCgCCCGGu-GCCg -3'
miRNA:   3'- -GGUGUCUuu-----GCGGCGaGGGUCcuUGG- -5'
19260 5' -54.2 NC_004684.1 + 53755 0.72 0.483318
Target:  5'- aCGCAGguGCGCgGCggcgaacgugCgCAGGAACCa -3'
miRNA:   3'- gGUGUCuuUGCGgCGa---------GgGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 14230 0.72 0.503588
Target:  5'- cCC-CGGAGgccuucACGCCGgaCCCGGuGGACCc -3'
miRNA:   3'- -GGuGUCUU------UGCGGCgaGGGUC-CUUGG- -5'
19260 5' -54.2 NC_004684.1 + 34698 0.72 0.513861
Target:  5'- aCGCGGAGACGuuGCgguugCCgAGGccguAGCCa -3'
miRNA:   3'- gGUGUCUUUGCggCGa----GGgUCC----UUGG- -5'
19260 5' -54.2 NC_004684.1 + 47678 0.72 0.524218
Target:  5'- cUCACcGAGugGCCG-UCCCAGGucuuggcucGGCCa -3'
miRNA:   3'- -GGUGuCUUugCGGCgAGGGUCC---------UUGG- -5'
19260 5' -54.2 NC_004684.1 + 37773 0.72 0.524218
Target:  5'- aUCGCGGugcagcugcACGCCGCUgCCUAGGAagucgucuucGCCg -3'
miRNA:   3'- -GGUGUCuu-------UGCGGCGA-GGGUCCU----------UGG- -5'
19260 5' -54.2 NC_004684.1 + 63248 0.72 0.524218
Target:  5'- uCCACGGuguccGCGCCgaugcGCUCCUggaccuGGAGCCg -3'
miRNA:   3'- -GGUGUCuu---UGCGG-----CGAGGGu-----CCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 12873 0.71 0.534654
Target:  5'- aCCGCcGAG--GCCGCcgCCgGGGAGCCu -3'
miRNA:   3'- -GGUGuCUUugCGGCGa-GGgUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 42411 0.71 0.555737
Target:  5'- -gGCAGGA-UGCCGC-CCUGGGAcACCg -3'
miRNA:   3'- ggUGUCUUuGCGGCGaGGGUCCU-UGG- -5'
19260 5' -54.2 NC_004684.1 + 149 0.71 0.555737
Target:  5'- gCC-CGGAAACGCCGgUCgaaCCGGuGACCg -3'
miRNA:   3'- -GGuGUCUUUGCGGCgAG---GGUCcUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.