miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19260 5' -54.2 NC_004684.1 + 61115 0.66 0.828661
Target:  5'- gCUACAGuu-CGCCGCgcucgugcauccggCCCAGcGACUg -3'
miRNA:   3'- -GGUGUCuuuGCGGCGa-------------GGGUCcUUGG- -5'
19260 5' -54.2 NC_004684.1 + 42360 0.66 0.825088
Target:  5'- gCCACGucGAUGCCGCcUCCAGcugcACCg -3'
miRNA:   3'- -GGUGUcuUUGCGGCGaGGGUCcu--UGG- -5'
19260 5' -54.2 NC_004684.1 + 52918 0.66 0.825088
Target:  5'- aCgGCGGcGugGCCGCaUUCCAGGcAGgCg -3'
miRNA:   3'- -GgUGUCuUugCGGCG-AGGGUCC-UUgG- -5'
19260 5' -54.2 NC_004684.1 + 21154 0.66 0.825088
Target:  5'- gCACGcGAAauACGCCGCagcugUCCacgaGGGGACUc -3'
miRNA:   3'- gGUGU-CUU--UGCGGCG-----AGGg---UCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 38508 0.66 0.824189
Target:  5'- gCCACGGc-GCGCCGUucgguguUCCCacuaugccgaccGGGAgacGCCa -3'
miRNA:   3'- -GGUGUCuuUGCGGCG-------AGGG------------UCCU---UGG- -5'
19260 5' -54.2 NC_004684.1 + 27429 0.66 0.816019
Target:  5'- gCGCAgGGGAUGgCGCUC-CGGGcACCg -3'
miRNA:   3'- gGUGU-CUUUGCgGCGAGgGUCCuUGG- -5'
19260 5' -54.2 NC_004684.1 + 31435 0.66 0.816019
Target:  5'- aCugGGAGACGCCGaaCCCguucgAGGAc-- -3'
miRNA:   3'- gGugUCUUUGCGGCgaGGG-----UCCUugg -5'
19260 5' -54.2 NC_004684.1 + 4220 0.66 0.816019
Target:  5'- gCCACGacugcauGCGCCuGCgcggcgCgCAGGAGCCg -3'
miRNA:   3'- -GGUGUcuu----UGCGG-CGa-----GgGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 7855 0.66 0.816019
Target:  5'- aCGCAucguuCGCCG-UCCCAagucGGAACCg -3'
miRNA:   3'- gGUGUcuuu-GCGGCgAGGGU----CCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 65751 0.66 0.859312
Target:  5'- cCCACuuGGGCGCCGgUaCCCGGuugcGCCg -3'
miRNA:   3'- -GGUGucUUUGCGGCgA-GGGUCcu--UGG- -5'
19260 5' -54.2 NC_004684.1 + 64523 0.66 0.825088
Target:  5'- aCCAgCAGGucgucCGgCGCgaCCAGGAACCc -3'
miRNA:   3'- -GGU-GUCUuu---GCgGCGagGGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 53819 0.66 0.859312
Target:  5'- uCCAUgcGGGCGUgCGCUUCCAGGcuggagugcAACCa -3'
miRNA:   3'- -GGUGucUUUGCG-GCGAGGGUCC---------UUGG- -5'
19260 5' -54.2 NC_004684.1 + 33908 0.66 0.842627
Target:  5'- gCGCGGAcagauaugGGCGCgCGCaUCCAGuGACCg -3'
miRNA:   3'- gGUGUCU--------UUGCG-GCGaGGGUCcUUGG- -5'
19260 5' -54.2 NC_004684.1 + 65571 0.66 0.83396
Target:  5'- aCCGCAGGucaGCCGCcauggCCuCGGucauGAGCCg -3'
miRNA:   3'- -GGUGUCUuugCGGCGa----GG-GUC----CUUGG- -5'
19260 5' -54.2 NC_004684.1 + 46884 0.66 0.833082
Target:  5'- uCCGCGcgacaugucagccGAGccccCGCCGCauccCCCAGGAccgGCCa -3'
miRNA:   3'- -GGUGU-------------CUUu---GCGGCGa---GGGUCCU---UGG- -5'
19260 5' -54.2 NC_004684.1 + 8430 0.66 0.851081
Target:  5'- cCCGCGcgccCGCCGggCCaGGGAACCu -3'
miRNA:   3'- -GGUGUcuuuGCGGCgaGGgUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 47120 0.66 0.851081
Target:  5'- cCgGCAGAGcguGCGCCucgguggcguagGCggccccggugCCCAGGAGCa -3'
miRNA:   3'- -GgUGUCUU---UGCGG------------CGa---------GGGUCCUUGg -5'
19260 5' -54.2 NC_004684.1 + 24171 0.66 0.833082
Target:  5'- uCCGCAGGcggUGCCGCcgCCCAaaaugccGGuGCCu -3'
miRNA:   3'- -GGUGUCUuu-GCGGCGa-GGGU-------CCuUGG- -5'
19260 5' -54.2 NC_004684.1 + 64407 0.66 0.83396
Target:  5'- aCGaAGguGCGCCGCccgccgUCCAGGGcACCg -3'
miRNA:   3'- gGUgUCuuUGCGGCGa-----GGGUCCU-UGG- -5'
19260 5' -54.2 NC_004684.1 + 37138 0.66 0.83396
Target:  5'- gCGCAcu-GCGCCGCcagUUCUGGGAGCg -3'
miRNA:   3'- gGUGUcuuUGCGGCG---AGGGUCCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.