miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 3' -61.6 NC_004684.1 + 50653 0.7 0.265859
Target:  5'- -cGCCgUCGGGGgugcgGaCCAGgcgugCGCCCGGUg -3'
miRNA:   3'- gcUGG-AGCCCCa----C-GGUCa----GCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 66508 0.7 0.265859
Target:  5'- gCGGCCUCGcGGGccGCCuucAGcgCgGCCCGGCg -3'
miRNA:   3'- -GCUGGAGC-CCCa-CGG---UCa-G-CGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 66653 0.7 0.272306
Target:  5'- uGGCCUCGGcGGcgGcCCGGUCaccggcgguGCCCAGg -3'
miRNA:   3'- gCUGGAGCC-CCa-C-GGUCAG---------CGGGUCg -5'
19261 3' -61.6 NC_004684.1 + 51546 0.7 0.278216
Target:  5'- uGACCUCGGcgugcgucgguguGGcgaUGCCgcgcgccaccgGGUCGCUCGGCg -3'
miRNA:   3'- gCUGGAGCC-------------CC---ACGG-----------UCAGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 42618 0.7 0.278879
Target:  5'- uCGACCagCGGcccGGUGCCGGUCuuCCCuGCc -3'
miRNA:   3'- -GCUGGa-GCC---CCACGGUCAGc-GGGuCG- -5'
19261 3' -61.6 NC_004684.1 + 6228 0.7 0.281543
Target:  5'- cCGACCUgGccGGGUGgcugaccgaguacacCCAGUCGCUgGGCc -3'
miRNA:   3'- -GCUGGAgC--CCCAC---------------GGUCAGCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 65374 0.69 0.285577
Target:  5'- uGGCCuggucaacgUCGGGGcgGuCCAG-CGCCCAGg -3'
miRNA:   3'- gCUGG---------AGCCCCa-C-GGUCaGCGGGUCg -5'
19261 3' -61.6 NC_004684.1 + 56714 0.69 0.285577
Target:  5'- cCGACCguugaggcguUCGGuGUGCCGGUCGaCCUcacugGGCa -3'
miRNA:   3'- -GCUGG----------AGCCcCACGGUCAGC-GGG-----UCG- -5'
19261 3' -61.6 NC_004684.1 + 20536 0.69 0.285577
Target:  5'- -cGCCUgGGuGG-GCCAGgcauUCGUCCAGCu -3'
miRNA:   3'- gcUGGAgCC-CCaCGGUC----AGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 17280 0.69 0.292402
Target:  5'- uGGCCaucgaggUGGGG-GCCAGcCGCCUGGUc -3'
miRNA:   3'- gCUGGa------GCCCCaCGGUCaGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 66629 0.69 0.292402
Target:  5'- -uGCCUCGGcGGUGuCCAGgagCGCCgCcagGGCg -3'
miRNA:   3'- gcUGGAGCC-CCAC-GGUCa--GCGG-G---UCG- -5'
19261 3' -61.6 NC_004684.1 + 40331 0.69 0.299353
Target:  5'- aCGACCUCGGcgcuGG-GCaGGUCGCUggCGGCg -3'
miRNA:   3'- -GCUGGAGCC----CCaCGgUCAGCGG--GUCG- -5'
19261 3' -61.6 NC_004684.1 + 50265 0.69 0.299353
Target:  5'- -cACCUUGGGGUcgucgcugGCCAG-CGCCaGGCc -3'
miRNA:   3'- gcUGGAGCCCCA--------CGGUCaGCGGgUCG- -5'
19261 3' -61.6 NC_004684.1 + 54529 0.69 0.299353
Target:  5'- gCGGCCUCGGcGGUGgCGGccUCGgCCuccGCg -3'
miRNA:   3'- -GCUGGAGCC-CCACgGUC--AGCgGGu--CG- -5'
19261 3' -61.6 NC_004684.1 + 54208 0.69 0.299353
Target:  5'- gCGGCCugcUCGGGGccgaGGUCGgCCAGCa -3'
miRNA:   3'- -GCUGG---AGCCCCacggUCAGCgGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 6084 0.69 0.306431
Target:  5'- gCGGCCcggCGGcGGUgcuGCCGGaaaUCGaCCCGGCg -3'
miRNA:   3'- -GCUGGa--GCC-CCA---CGGUC---AGC-GGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 12394 0.69 0.306431
Target:  5'- -uGCgCUCGGuGGUGCaCGGUCGCCguuUAGUg -3'
miRNA:   3'- gcUG-GAGCC-CCACG-GUCAGCGG---GUCG- -5'
19261 3' -61.6 NC_004684.1 + 45929 0.69 0.313637
Target:  5'- -cACCucgucgguggUCGGGGUGUCcucuccgucGUCGUCCAGCa -3'
miRNA:   3'- gcUGG----------AGCCCCACGGu--------CAGCGGGUCG- -5'
19261 3' -61.6 NC_004684.1 + 38005 0.69 0.32097
Target:  5'- uGuCCUCGGccaucuGGUGCCAcaaCGCCuCAGCg -3'
miRNA:   3'- gCuGGAGCC------CCACGGUca-GCGG-GUCG- -5'
19261 3' -61.6 NC_004684.1 + 42181 0.68 0.328431
Target:  5'- gCGugC-CGGugaagccacccGGUGCCAG-CGCCUGGCc -3'
miRNA:   3'- -GCugGaGCC-----------CCACGGUCaGCGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.