Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19262 | 3' | -52.9 | NC_004684.1 | + | 5395 | 0.68 | 0.802135 |
Target: 5'- uCGCGA---UUGUGcGCGGCGG-GUGCGg -3' miRNA: 3'- -GUGCUacuAGCAC-CGCCGCUaCAUGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 9372 | 0.66 | 0.879651 |
Target: 5'- gGCGAaaUGGUCGgccuCGGCGAaGUACGc -3' miRNA: 3'- gUGCU--ACUAGCacc-GCCGCUaCAUGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 9665 | 0.66 | 0.901228 |
Target: 5'- gGCGGUGAa----GCGcGCGGUGUACGg -3' miRNA: 3'- gUGCUACUagcacCGC-CGCUACAUGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 10901 | 0.66 | 0.901228 |
Target: 5'- aCGCGGUGAUCGcgcUGGuCGGUGAa----- -3' miRNA: 3'- -GUGCUACUAGC---ACC-GCCGCUacaugc -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 11864 | 0.69 | 0.731713 |
Target: 5'- gUACGAac-UCGUGGCGGCGcUG-GCGg -3' miRNA: 3'- -GUGCUacuAGCACCGCCGCuACaUGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 22365 | 0.68 | 0.820836 |
Target: 5'- gGCGgcGGUCGcgcUGGCGGUGGacGUGCa -3' miRNA: 3'- gUGCuaCUAGC---ACCGCCGCUa-CAUGc -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 27188 | 0.7 | 0.67823 |
Target: 5'- cCACGgcGAUCuuUGGCGGCG--GUGCGa -3' miRNA: 3'- -GUGCuaCUAGc-ACCGCCGCuaCAUGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 28058 | 0.66 | 0.879651 |
Target: 5'- -cCGGUGGUCGgcccCGGCGGUGUGg- -3' miRNA: 3'- guGCUACUAGCacc-GCCGCUACAUgc -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 30218 | 0.66 | 0.875059 |
Target: 5'- cCAUGGUGAUCGgggaGGCGGCccccgaacccaccaaGGUG-GCGc -3' miRNA: 3'- -GUGCUACUAGCa---CCGCCG---------------CUACaUGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 30860 | 0.66 | 0.894296 |
Target: 5'- gCGCGGUGAc---GGCaGGCGAUGUGUGg -3' miRNA: 3'- -GUGCUACUagcaCCG-CCGCUACAUGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 32555 | 0.67 | 0.842237 |
Target: 5'- gGCGAUGAccuggagauUCG-GGCGGUcggcucgcucuacaaGGUGUACa -3' miRNA: 3'- gUGCUACU---------AGCaCCGCCG---------------CUACAUGc -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 32871 | 0.67 | 0.829898 |
Target: 5'- gCAUGA-GAUCG-GGUGGUGGgcgGUGCu -3' miRNA: 3'- -GUGCUaCUAGCaCCGCCGCUa--CAUGc -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 33356 | 0.67 | 0.864 |
Target: 5'- --aGAUGAcCGagGGCGGUG-UGUACGc -3' miRNA: 3'- gugCUACUaGCa-CCGCCGCuACAUGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 33486 | 0.73 | 0.505694 |
Target: 5'- uGCGGUGGaCGcGGCGGCGGcccUGUACu -3' miRNA: 3'- gUGCUACUaGCaCCGCCGCU---ACAUGc -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 33810 | 0.67 | 0.838754 |
Target: 5'- aGCGGUucggCGUcGGCgGGCGGUGUGCc -3' miRNA: 3'- gUGCUAcua-GCA-CCG-CCGCUACAUGc -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 34863 | 0.75 | 0.42617 |
Target: 5'- gCGCGAacGUUGUGGUGGCGGUGgcccggACGg -3' miRNA: 3'- -GUGCUacUAGCACCGCCGCUACa-----UGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 35652 | 0.67 | 0.855813 |
Target: 5'- gACGuacagGGcCGUcGGCGGCGGUGUGuCGc -3' miRNA: 3'- gUGCua---CUaGCA-CCGCCGCUACAU-GC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 40301 | 0.66 | 0.901228 |
Target: 5'- -uCGGUaccGAUCuG-GGCGGCGAUGUccACGc -3' miRNA: 3'- guGCUA---CUAG-CaCCGCCGCUACA--UGC- -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 40738 | 0.67 | 0.864 |
Target: 5'- gGCGggGGcgGUGGCGGUGGUGUu-- -3' miRNA: 3'- gUGCuaCUagCACCGCCGCUACAugc -5' |
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19262 | 3' | -52.9 | NC_004684.1 | + | 41413 | 0.77 | 0.329989 |
Target: 5'- uCGCGGUGGcguccccCGUGGCGGUGGUGcgGCGg -3' miRNA: 3'- -GUGCUACUa------GCACCGCCGCUACa-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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