miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19262 3' -52.9 NC_004684.1 + 30218 0.66 0.875059
Target:  5'- cCAUGGUGAUCGgggaGGCGGCccccgaacccaccaaGGUG-GCGc -3'
miRNA:   3'- -GUGCUACUAGCa---CCGCCG---------------CUACaUGC- -5'
19262 3' -52.9 NC_004684.1 + 33810 0.67 0.838754
Target:  5'- aGCGGUucggCGUcGGCgGGCGGUGUGCc -3'
miRNA:   3'- gUGCUAcua-GCA-CCG-CCGCUACAUGc -5'
19262 3' -52.9 NC_004684.1 + 32555 0.67 0.842237
Target:  5'- gGCGAUGAccuggagauUCG-GGCGGUcggcucgcucuacaaGGUGUACa -3'
miRNA:   3'- gUGCUACU---------AGCaCCGCCG---------------CUACAUGc -5'
19262 3' -52.9 NC_004684.1 + 56146 0.67 0.846541
Target:  5'- aACGAUGAgCGUGGCccuggccgacgacGGCGAcg-ACGg -3'
miRNA:   3'- gUGCUACUaGCACCG-------------CCGCUacaUGC- -5'
19262 3' -52.9 NC_004684.1 + 60847 0.67 0.847395
Target:  5'- -uCGAUG-UCcacGGCGGCGAUGU-CGg -3'
miRNA:   3'- guGCUACuAGca-CCGCCGCUACAuGC- -5'
19262 3' -52.9 NC_004684.1 + 46687 0.67 0.864
Target:  5'- uGCGGUGG-CGgugcGGUGGCGcgcccUGUGCGa -3'
miRNA:   3'- gUGCUACUaGCa---CCGCCGCu----ACAUGC- -5'
19262 3' -52.9 NC_004684.1 + 59458 0.67 0.864
Target:  5'- uGCGccGGUC--GGCGGCGAUGUccaccaccugcGCGg -3'
miRNA:   3'- gUGCuaCUAGcaCCGCCGCUACA-----------UGC- -5'
19262 3' -52.9 NC_004684.1 + 40738 0.67 0.864
Target:  5'- gGCGggGGcgGUGGCGGUGGUGUu-- -3'
miRNA:   3'- gUGCuaCUagCACCGCCGCUACAugc -5'
19262 3' -52.9 NC_004684.1 + 53884 0.66 0.871948
Target:  5'- uGCGGUGccuucUCGUGGgGGUGGuUGUgACGg -3'
miRNA:   3'- gUGCUACu----AGCACCgCCGCU-ACA-UGC- -5'
19262 3' -52.9 NC_004684.1 + 32871 0.67 0.829898
Target:  5'- gCAUGA-GAUCG-GGUGGUGGgcgGUGCu -3'
miRNA:   3'- -GUGCUaCUAGCaCCGCCGCUa--CAUGc -5'
19262 3' -52.9 NC_004684.1 + 22365 0.68 0.820836
Target:  5'- gGCGgcGGUCGcgcUGGCGGUGGacGUGCa -3'
miRNA:   3'- gUGCuaCUAGC---ACCGCCGCUa-CAUGc -5'
19262 3' -52.9 NC_004684.1 + 57139 0.69 0.76271
Target:  5'- gCGCGGcUGGuUCGccuccaUGGCGGCGGUGgcCGa -3'
miRNA:   3'- -GUGCU-ACU-AGC------ACCGCCGCUACauGC- -5'
19262 3' -52.9 NC_004684.1 + 41413 0.77 0.329989
Target:  5'- uCGCGGUGGcguccccCGUGGCGGUGGUGcgGCGg -3'
miRNA:   3'- -GUGCUACUa------GCACCGCCGCUACa-UGC- -5'
19262 3' -52.9 NC_004684.1 + 33486 0.73 0.505694
Target:  5'- uGCGGUGGaCGcGGCGGCGGcccUGUACu -3'
miRNA:   3'- gUGCUACUaGCaCCGCCGCU---ACAUGc -5'
19262 3' -52.9 NC_004684.1 + 46345 0.72 0.569253
Target:  5'- aCACGAUGGgagCGUGGUGGUcGUcGUGCu -3'
miRNA:   3'- -GUGCUACUa--GCACCGCCGcUA-CAUGc -5'
19262 3' -52.9 NC_004684.1 + 64851 0.71 0.612725
Target:  5'- gGCgGGUGGUUGUGGUGGgGG-GUGCGc -3'
miRNA:   3'- gUG-CUACUAGCACCGCCgCUaCAUGC- -5'
19262 3' -52.9 NC_004684.1 + 27188 0.7 0.67823
Target:  5'- cCACGgcGAUCuuUGGCGGCG--GUGCGa -3'
miRNA:   3'- -GUGCuaCUAGc-ACCGCCGCuaCAUGC- -5'
19262 3' -52.9 NC_004684.1 + 64920 0.7 0.710537
Target:  5'- gGCGgcGAcccagGUGGCGGCGGUGaGCGc -3'
miRNA:   3'- gUGCuaCUag---CACCGCCGCUACaUGC- -5'
19262 3' -52.9 NC_004684.1 + 47949 0.69 0.721169
Target:  5'- -uUGGUGGcgUCGgcacGGCuGGCGGUGUACGc -3'
miRNA:   3'- guGCUACU--AGCa---CCG-CCGCUACAUGC- -5'
19262 3' -52.9 NC_004684.1 + 11864 0.69 0.731713
Target:  5'- gUACGAac-UCGUGGCGGCGcUG-GCGg -3'
miRNA:   3'- -GUGCUacuAGCACCGCCGCuACaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.