miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19264 3' -61 NC_004685.1 + 69410 1.08 0.000452
Target:  5'- cGACCCCGAACCCGGCGCAGACGAGCAa -3'
miRNA:   3'- -CUGGGGCUUGGGCCGCGUCUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 49665 0.78 0.084687
Target:  5'- cGCCCCGGcgggucGCCCGacucGCGCAGACGGGUg -3'
miRNA:   3'- cUGGGGCU------UGGGC----CGCGUCUGCUCGu -5'
19264 3' -61 NC_004685.1 + 40036 0.77 0.099592
Target:  5'- cACCCUGGugCUGGCGCAGAuCGAcGCGg -3'
miRNA:   3'- cUGGGGCUugGGCCGCGUCU-GCU-CGU- -5'
19264 3' -61 NC_004685.1 + 2911 0.75 0.137092
Target:  5'- cGGCCCCaGugCCGGUGCGG-CGGGCc -3'
miRNA:   3'- -CUGGGGcUugGGCCGCGUCuGCUCGu -5'
19264 3' -61 NC_004685.1 + 15722 0.72 0.192005
Target:  5'- cACCCCGAguugggGCUCGGCGCAgGACaAGCu -3'
miRNA:   3'- cUGGGGCU------UGGGCCGCGU-CUGcUCGu -5'
19264 3' -61 NC_004685.1 + 4189 0.72 0.21244
Target:  5'- --gCCCGAcgguuACCCGGUGguGGCGuGCGg -3'
miRNA:   3'- cugGGGCU-----UGGGCCGCguCUGCuCGU- -5'
19264 3' -61 NC_004685.1 + 69276 0.72 0.21244
Target:  5'- aGCCCCGAGCUCGccgcCGCcuACGAGCAg -3'
miRNA:   3'- cUGGGGCUUGGGCc---GCGucUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 38519 0.72 0.217833
Target:  5'- cGCCCaGGA-CCGGCGCGGcgGCGAGCGu -3'
miRNA:   3'- cUGGGgCUUgGGCCGCGUC--UGCUCGU- -5'
19264 3' -61 NC_004685.1 + 23385 0.72 0.217833
Target:  5'- uGACCuCCGAugCCGGUGagacGACGGGUg -3'
miRNA:   3'- -CUGG-GGCUugGGCCGCgu--CUGCUCGu -5'
19264 3' -61 NC_004685.1 + 24846 0.71 0.223343
Target:  5'- cAUCCUGAuguucGCCCGGCGCAaGCGGGgCAa -3'
miRNA:   3'- cUGGGGCU-----UGGGCCGCGUcUGCUC-GU- -5'
19264 3' -61 NC_004685.1 + 3686 0.71 0.240585
Target:  5'- cGACgCCGAcgGCUCGGCGCGGGuguaucgcgcCGAGUAc -3'
miRNA:   3'- -CUGgGGCU--UGGGCCGCGUCU----------GCUCGU- -5'
19264 3' -61 NC_004685.1 + 2366 0.71 0.252687
Target:  5'- cACCCCGGGCCagcguuCGGC-CAGcACGAGCu -3'
miRNA:   3'- cUGGGGCUUGG------GCCGcGUC-UGCUCGu -5'
19264 3' -61 NC_004685.1 + 40467 0.7 0.292002
Target:  5'- gGACgCCGAACCUGGCGCugccgcagauucAGGCGcuGCu -3'
miRNA:   3'- -CUGgGGCUUGGGCCGCG------------UCUGCu-CGu -5'
19264 3' -61 NC_004685.1 + 32410 0.7 0.292002
Target:  5'- cGACCCgaaCGGACCCGGCacgaacaguccGCGGAUGGccuGCAc -3'
miRNA:   3'- -CUGGG---GCUUGGGCCG-----------CGUCUGCU---CGU- -5'
19264 3' -61 NC_004685.1 + 6881 0.7 0.292002
Target:  5'- cGGCCCCGGuuccCCCGGCcguucaGCAGGCGuuccccgguGCGa -3'
miRNA:   3'- -CUGGGGCUu---GGGCCG------CGUCUGCu--------CGU- -5'
19264 3' -61 NC_004685.1 + 62998 0.7 0.299002
Target:  5'- aGGCCCaCGcggaagcuGCCCGGCGUGGGCGcGGUg -3'
miRNA:   3'- -CUGGG-GCu-------UGGGCCGCGUCUGC-UCGu -5'
19264 3' -61 NC_004685.1 + 18656 0.7 0.299002
Target:  5'- cGGCCCCGGuCCUGaCGCAGAUcaGGGCu -3'
miRNA:   3'- -CUGGGGCUuGGGCcGCGUCUG--CUCGu -5'
19264 3' -61 NC_004685.1 + 26219 0.69 0.30613
Target:  5'- cGACgCCGGACUucaGGCGC--GCGAGCAg -3'
miRNA:   3'- -CUGgGGCUUGGg--CCGCGucUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 61506 0.69 0.313388
Target:  5'- -uCCUCGAACCCGGCcucguGCGcGGCG-GCAa -3'
miRNA:   3'- cuGGGGCUUGGGCCG-----CGU-CUGCuCGU- -5'
19264 3' -61 NC_004685.1 + 39978 0.69 0.320776
Target:  5'- aGACCCUGAcCCUGGCGCAccgGACccGCu -3'
miRNA:   3'- -CUGGGGCUuGGGCCGCGU---CUGcuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.