miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19264 3' -61 NC_004685.1 + 2366 0.71 0.252687
Target:  5'- cACCCCGGGCCagcguuCGGC-CAGcACGAGCu -3'
miRNA:   3'- cUGGGGCUUGG------GCCGcGUC-UGCUCGu -5'
19264 3' -61 NC_004685.1 + 2765 0.66 0.504294
Target:  5'- gGGCaCgGuGCCgCGGCGCGcGACGGGCGg -3'
miRNA:   3'- -CUGgGgCuUGG-GCCGCGU-CUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 2911 0.75 0.137092
Target:  5'- cGGCCCCaGugCCGGUGCGG-CGGGCc -3'
miRNA:   3'- -CUGGGGcUugGGCCGCGUCuGCUCGu -5'
19264 3' -61 NC_004685.1 + 3350 0.68 0.3761
Target:  5'- cGCCUgGAugaCCGG-GCGGGCGGGCGg -3'
miRNA:   3'- cUGGGgCUug-GGCCgCGUCUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 3686 0.71 0.240585
Target:  5'- cGACgCCGAcgGCUCGGCGCGGGuguaucgcgcCGAGUAc -3'
miRNA:   3'- -CUGgGGCU--UGGGCCGCGUCU----------GCUCGU- -5'
19264 3' -61 NC_004685.1 + 3995 0.68 0.3761
Target:  5'- cGACagCCG-GCCCGGUGUAgucGACGGGCu -3'
miRNA:   3'- -CUGg-GGCuUGGGCCGCGU---CUGCUCGu -5'
19264 3' -61 NC_004685.1 + 3998 0.66 0.494469
Target:  5'- cACCaa-AGCCCGGCGC-GACGuGCGc -3'
miRNA:   3'- cUGGggcUUGGGCCGCGuCUGCuCGU- -5'
19264 3' -61 NC_004685.1 + 4189 0.72 0.21244
Target:  5'- --gCCCGAcgguuACCCGGUGguGGCGuGCGg -3'
miRNA:   3'- cugGGGCU-----UGGGCCGCguCUGCuCGU- -5'
19264 3' -61 NC_004685.1 + 6556 0.66 0.484732
Target:  5'- uGAUCCUGGaggugcuggcaGCUCGGCaccgGCuGGGCGAGCAg -3'
miRNA:   3'- -CUGGGGCU-----------UGGGCCG----CG-UCUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 6881 0.7 0.292002
Target:  5'- cGGCCCCGGuuccCCCGGCcguucaGCAGGCGuuccccgguGCGa -3'
miRNA:   3'- -CUGGGGCUu---GGGCCG------CGUCUGCu--------CGU- -5'
19264 3' -61 NC_004685.1 + 7071 0.66 0.456092
Target:  5'- -cCCUCGAauACCCGcUGUAGAUGAGCc -3'
miRNA:   3'- cuGGGGCU--UGGGCcGCGUCUGCUCGu -5'
19264 3' -61 NC_004685.1 + 7268 0.66 0.501338
Target:  5'- uGCCCCGAcggcgaccacuggcACCUGuCGCAucACGAGCAg -3'
miRNA:   3'- cUGGGGCU--------------UGGGCcGCGUc-UGCUCGU- -5'
19264 3' -61 NC_004685.1 + 9213 0.68 0.367814
Target:  5'- cGACCCCGAcgccaaggagGCCa-GCGCGGAuUGGGCc -3'
miRNA:   3'- -CUGGGGCU----------UGGgcCGCGUCU-GCUCGu -5'
19264 3' -61 NC_004685.1 + 11855 0.66 0.494469
Target:  5'- cGACCgCCGAccuGCUCGGCG-AGGCGAu-- -3'
miRNA:   3'- -CUGG-GGCU---UGGGCCGCgUCUGCUcgu -5'
19264 3' -61 NC_004685.1 + 12714 0.66 0.456092
Target:  5'- aGCCgCCGAAgCCGGUGCAcGCgcuGAGCu -3'
miRNA:   3'- cUGG-GGCUUgGGCCGCGUcUG---CUCGu -5'
19264 3' -61 NC_004685.1 + 13687 0.69 0.33594
Target:  5'- uGGCCgCGggUgCGGCGCAccugcaACGAGCGa -3'
miRNA:   3'- -CUGGgGCuuGgGCCGCGUc-----UGCUCGU- -5'
19264 3' -61 NC_004685.1 + 15722 0.72 0.192005
Target:  5'- cACCCCGAguugggGCUCGGCGCAgGACaAGCu -3'
miRNA:   3'- cUGGGGCU------UGGGCCGCGU-CUGcUCGu -5'
19264 3' -61 NC_004685.1 + 18656 0.7 0.299002
Target:  5'- cGGCCCCGGuCCUGaCGCAGAUcaGGGCu -3'
miRNA:   3'- -CUGGGGCUuGGGCcGCGUCUG--CUCGu -5'
19264 3' -61 NC_004685.1 + 23385 0.72 0.217833
Target:  5'- uGACCuCCGAugCCGGUGagacGACGGGUg -3'
miRNA:   3'- -CUGG-GGCUugGGCCGCgu--CUGCUCGu -5'
19264 3' -61 NC_004685.1 + 23447 0.67 0.409599
Target:  5'- uGACCCCGAgguaaagcuccagACgCUGGCGUucGcCGAGCGg -3'
miRNA:   3'- -CUGGGGCU-------------UG-GGCCGCGu-CuGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.