miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19264 3' -61 NC_004685.1 + 69410 1.08 0.000452
Target:  5'- cGACCCCGAACCCGGCGCAGACGAGCAa -3'
miRNA:   3'- -CUGGGGCUUGGGCCGCGUCUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 69276 0.72 0.21244
Target:  5'- aGCCCCGAGCUCGccgcCGCcuACGAGCAg -3'
miRNA:   3'- cUGGGGCUUGGGCc---GCGucUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 69142 0.67 0.401704
Target:  5'- uGCgUCGAcACCCGcGCGCugcuGGCGGGCGa -3'
miRNA:   3'- cUGgGGCU-UGGGC-CGCGu---CUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 68600 0.66 0.484732
Target:  5'- uGCCCCGcAUCCGccCGCAGgacugcGCGGGCAa -3'
miRNA:   3'- cUGGGGCuUGGGCc-GCGUC------UGCUCGU- -5'
19264 3' -61 NC_004685.1 + 68340 0.69 0.326025
Target:  5'- cGCCCCGggUCCGugugugcgugcgccGCGCGGGucCGAGUg -3'
miRNA:   3'- cUGGGGCuuGGGC--------------CGCGUCU--GCUCGu -5'
19264 3' -61 NC_004685.1 + 67776 0.66 0.494469
Target:  5'- uGACgCC-AACCgCGGcCGCAG-CGGGCAc -3'
miRNA:   3'- -CUGgGGcUUGG-GCC-GCGUCuGCUCGU- -5'
19264 3' -61 NC_004685.1 + 65656 0.69 0.328293
Target:  5'- cGugCCCGAACCCGagccGCGCgaAGGCcAGCc -3'
miRNA:   3'- -CugGGGCUUGGGC----CGCG--UCUGcUCGu -5'
19264 3' -61 NC_004685.1 + 62998 0.7 0.299002
Target:  5'- aGGCCCaCGcggaagcuGCCCGGCGUGGGCGcGGUg -3'
miRNA:   3'- -CUGGG-GCu-------UGGGCCGCGUCUGC-UCGu -5'
19264 3' -61 NC_004685.1 + 62640 0.69 0.343716
Target:  5'- cGGCCCUGGcguuGCgCaGCGCGG-CGAGCAg -3'
miRNA:   3'- -CUGGGGCU----UGgGcCGCGUCuGCUCGU- -5'
19264 3' -61 NC_004685.1 + 61594 0.66 0.484732
Target:  5'- uGACCaCCG-ACCCGGCcauCAGAUGcGCc -3'
miRNA:   3'- -CUGG-GGCuUGGGCCGc--GUCUGCuCGu -5'
19264 3' -61 NC_004685.1 + 61506 0.69 0.313388
Target:  5'- -uCCUCGAACCCGGCcucguGCGcGGCG-GCAa -3'
miRNA:   3'- cuGGGGCUUGGGCCG-----CGU-CUGCuCGU- -5'
19264 3' -61 NC_004685.1 + 58286 0.67 0.446749
Target:  5'- cACCgCCGaAACCCGGCGCucGAUucGCGc -3'
miRNA:   3'- cUGG-GGC-UUGGGCCGCGu-CUGcuCGU- -5'
19264 3' -61 NC_004685.1 + 57037 0.69 0.328293
Target:  5'- cACCuuGAcccGCCCGGCG---GCGAGCAg -3'
miRNA:   3'- cUGGggCU---UGGGCCGCgucUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 55496 0.69 0.343716
Target:  5'- cGACCuuGGucaccgacaGCCCGGCGU---CGAGCAg -3'
miRNA:   3'- -CUGGggCU---------UGGGCCGCGucuGCUCGU- -5'
19264 3' -61 NC_004685.1 + 51145 0.66 0.484732
Target:  5'- aGACCCuCGGGCUcgacuucgCGGuUGCGGACGcGCAc -3'
miRNA:   3'- -CUGGG-GCUUGG--------GCC-GCGUCUGCuCGU- -5'
19264 3' -61 NC_004685.1 + 49665 0.78 0.084687
Target:  5'- cGCCCCGGcgggucGCCCGacucGCGCAGACGGGUg -3'
miRNA:   3'- cUGGGGCU------UGGGC----CGCGUCUGCUCGu -5'
19264 3' -61 NC_004685.1 + 48154 0.66 0.474128
Target:  5'- cACCCCGGcuggcccgaugugGCCCGGCuCGu-CGGGCAg -3'
miRNA:   3'- cUGGGGCU-------------UGGGCCGcGUcuGCUCGU- -5'
19264 3' -61 NC_004685.1 + 42809 0.66 0.459859
Target:  5'- gGACCCUGGcuCCCGGC-CAGGucgcccuguuugcgcUGAGCGg -3'
miRNA:   3'- -CUGGGGCUu-GGGCCGcGUCU---------------GCUCGU- -5'
19264 3' -61 NC_004685.1 + 40467 0.7 0.292002
Target:  5'- gGACgCCGAACCUGGCGCugccgcagauucAGGCGcuGCu -3'
miRNA:   3'- -CUGgGGCUUGGGCCGCG------------UCUGCu-CGu -5'
19264 3' -61 NC_004685.1 + 40036 0.77 0.099592
Target:  5'- cACCCUGGugCUGGCGCAGAuCGAcGCGg -3'
miRNA:   3'- cUGGGGCUugGGCCGCGUCU-GCU-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.