miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19264 3' -61 NC_004685.1 + 23528 0.68 0.367814
Target:  5'- cGACCCCGGucACCCcuaCGC-GACGGGCc -3'
miRNA:   3'- -CUGGGGCU--UGGGcc-GCGuCUGCUCGu -5'
19264 3' -61 NC_004685.1 + 24846 0.71 0.223343
Target:  5'- cAUCCUGAuguucGCCCGGCGCAaGCGGGgCAa -3'
miRNA:   3'- cUGGGGCU-----UGGGCCGCGUcUGCUC-GU- -5'
19264 3' -61 NC_004685.1 + 26219 0.69 0.30613
Target:  5'- cGACgCCGGACUucaGGCGC--GCGAGCAg -3'
miRNA:   3'- -CUGgGGCUUGGg--CCGCGucUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 26627 0.66 0.465539
Target:  5'- cGACCgcggCGAGCaCCGcCGCAccGACGAGCAc -3'
miRNA:   3'- -CUGGg---GCUUG-GGCcGCGU--CUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 31242 0.66 0.508248
Target:  5'- --gCUCGGGCCUGGUcggcaucgcggccgcGCAGAUGGGCu -3'
miRNA:   3'- cugGGGCUUGGGCCG---------------CGUCUGCUCGu -5'
19264 3' -61 NC_004685.1 + 31693 0.66 0.504294
Target:  5'- cGCCCUGcgucACCaccaGGCGCGGGCGAa-- -3'
miRNA:   3'- cUGGGGCu---UGGg---CCGCGUCUGCUcgu -5'
19264 3' -61 NC_004685.1 + 31989 0.68 0.3761
Target:  5'- cGACCuucaCCGAgccggucgACCCGGCGguG-CGAGUc -3'
miRNA:   3'- -CUGG----GGCU--------UGGGCCGCguCuGCUCGu -5'
19264 3' -61 NC_004685.1 + 32103 0.67 0.419377
Target:  5'- cACCCCGAACUCGcCGCAGcucacacCGGGUg -3'
miRNA:   3'- cUGGGGCUUGGGCcGCGUCu------GCUCGu -5'
19264 3' -61 NC_004685.1 + 32410 0.7 0.292002
Target:  5'- cGACCCgaaCGGACCCGGCacgaacaguccGCGGAUGGccuGCAc -3'
miRNA:   3'- -CUGGG---GCUUGGGCCG-----------CGUCUGCU---CGU- -5'
19264 3' -61 NC_004685.1 + 32477 0.67 0.428389
Target:  5'- cGGCCCCGGcgcugcccaACCUGGCagGCAacGGCG-GCAa -3'
miRNA:   3'- -CUGGGGCU---------UGGGCCG--CGU--CUGCuCGU- -5'
19264 3' -61 NC_004685.1 + 32969 0.68 0.393047
Target:  5'- uGAUCCC--GCCgUGGCaGCAGAuCGAGCAg -3'
miRNA:   3'- -CUGGGGcuUGG-GCCG-CGUCU-GCUCGU- -5'
19264 3' -61 NC_004685.1 + 33741 0.68 0.393047
Target:  5'- cAUCCCGccgcuGCCCGGCG-AGACGugguGCGu -3'
miRNA:   3'- cUGGGGCu----UGGGCCGCgUCUGCu---CGU- -5'
19264 3' -61 NC_004685.1 + 37132 0.66 0.484732
Target:  5'- cGCCgCGAucuGCuCCGGCGUGGcCGGGCc -3'
miRNA:   3'- cUGGgGCU---UG-GGCCGCGUCuGCUCGu -5'
19264 3' -61 NC_004685.1 + 37990 0.67 0.419377
Target:  5'- --gCCCGcGCCUGGUGguGACGcagGGCGc -3'
miRNA:   3'- cugGGGCuUGGGCCGCguCUGC---UCGU- -5'
19264 3' -61 NC_004685.1 + 38519 0.72 0.217833
Target:  5'- cGCCCaGGA-CCGGCGCGGcgGCGAGCGu -3'
miRNA:   3'- cUGGGgCUUgGGCCGCGUC--UGCUCGU- -5'
19264 3' -61 NC_004685.1 + 39194 0.67 0.414026
Target:  5'- gGACCCCGGaacgcuccacgcGCCgccuggcggcggcuuCGGCGCcggcugggGGACGGGCu -3'
miRNA:   3'- -CUGGGGCU------------UGG---------------GCCGCG--------UCUGCUCGu -5'
19264 3' -61 NC_004685.1 + 39473 0.68 0.384512
Target:  5'- cGCCCaGAugGCCgCGGCGCccaggccGACGAGCGc -3'
miRNA:   3'- cUGGGgCU--UGG-GCCGCGu------CUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 39978 0.69 0.320776
Target:  5'- aGACCCUGAcCCUGGCGCAccgGACccGCu -3'
miRNA:   3'- -CUGGGGCUuGGGCCGCGU---CUGcuCGu -5'
19264 3' -61 NC_004685.1 + 40036 0.77 0.099592
Target:  5'- cACCCUGGugCUGGCGCAGAuCGAcGCGg -3'
miRNA:   3'- cUGGGGCUugGGCCGCGUCU-GCU-CGU- -5'
19264 3' -61 NC_004685.1 + 40467 0.7 0.292002
Target:  5'- gGACgCCGAACCUGGCGCugccgcagauucAGGCGcuGCu -3'
miRNA:   3'- -CUGgGGCUUGGGCCGCG------------UCUGCu-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.