miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19264 3' -61 NC_004685.1 + 32103 0.67 0.419377
Target:  5'- cACCCCGAACUCGcCGCAGcucacacCGGGUg -3'
miRNA:   3'- cUGGGGCUUGGGCcGCGUCu------GCUCGu -5'
19264 3' -61 NC_004685.1 + 39194 0.67 0.414026
Target:  5'- gGACCCCGGaacgcuccacgcGCCgccuggcggcggcuuCGGCGCcggcugggGGACGGGCu -3'
miRNA:   3'- -CUGGGGCU------------UGG---------------GCCGCG--------UCUGCUCGu -5'
19264 3' -61 NC_004685.1 + 23447 0.67 0.409599
Target:  5'- uGACCCCGAgguaaagcuccagACgCUGGCGUucGcCGAGCGg -3'
miRNA:   3'- -CUGGGGCU-------------UG-GGCCGCGu-CuGCUCGU- -5'
19264 3' -61 NC_004685.1 + 69142 0.67 0.401704
Target:  5'- uGCgUCGAcACCCGcGCGCugcuGGCGGGCGa -3'
miRNA:   3'- cUGgGGCU-UGGGC-CGCGu---CUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 32969 0.68 0.393047
Target:  5'- uGAUCCC--GCCgUGGCaGCAGAuCGAGCAg -3'
miRNA:   3'- -CUGGGGcuUGG-GCCG-CGUCU-GCUCGU- -5'
19264 3' -61 NC_004685.1 + 33741 0.68 0.393047
Target:  5'- cAUCCCGccgcuGCCCGGCG-AGACGugguGCGu -3'
miRNA:   3'- cUGGGGCu----UGGGCCGCgUCUGCu---CGU- -5'
19264 3' -61 NC_004685.1 + 39473 0.68 0.384512
Target:  5'- cGCCCaGAugGCCgCGGCGCccaggccGACGAGCGc -3'
miRNA:   3'- cUGGGgCU--UGG-GCCGCGu------CUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 3995 0.68 0.3761
Target:  5'- cGACagCCG-GCCCGGUGUAgucGACGGGCu -3'
miRNA:   3'- -CUGg-GGCuUGGGCCGCGU---CUGCUCGu -5'
19264 3' -61 NC_004685.1 + 31989 0.68 0.3761
Target:  5'- cGACCuucaCCGAgccggucgACCCGGCGguG-CGAGUc -3'
miRNA:   3'- -CUGG----GGCU--------UGGGCCGCguCuGCUCGu -5'
19264 3' -61 NC_004685.1 + 3350 0.68 0.3761
Target:  5'- cGCCUgGAugaCCGG-GCGGGCGGGCGg -3'
miRNA:   3'- cUGGGgCUug-GGCCgCGUCUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 23528 0.68 0.367814
Target:  5'- cGACCCCGGucACCCcuaCGC-GACGGGCc -3'
miRNA:   3'- -CUGGGGCU--UGGGcc-GCGuCUGCUCGu -5'
19264 3' -61 NC_004685.1 + 9213 0.68 0.367814
Target:  5'- cGACCCCGAcgccaaggagGCCa-GCGCGGAuUGGGCc -3'
miRNA:   3'- -CUGGGGCU----------UGGgcCGCGUCU-GCUCGu -5'
19264 3' -61 NC_004685.1 + 62640 0.69 0.343716
Target:  5'- cGGCCCUGGcguuGCgCaGCGCGG-CGAGCAg -3'
miRNA:   3'- -CUGGGGCU----UGgGcCGCGUCuGCUCGU- -5'
19264 3' -61 NC_004685.1 + 55496 0.69 0.343716
Target:  5'- cGACCuuGGucaccgacaGCCCGGCGU---CGAGCAg -3'
miRNA:   3'- -CUGGggCU---------UGGGCCGCGucuGCUCGU- -5'
19264 3' -61 NC_004685.1 + 13687 0.69 0.33594
Target:  5'- uGGCCgCGggUgCGGCGCAccugcaACGAGCGa -3'
miRNA:   3'- -CUGGgGCuuGgGCCGCGUc-----UGCUCGU- -5'
19264 3' -61 NC_004685.1 + 65656 0.69 0.328293
Target:  5'- cGugCCCGAACCCGagccGCGCgaAGGCcAGCc -3'
miRNA:   3'- -CugGGGCUUGGGC----CGCG--UCUGcUCGu -5'
19264 3' -61 NC_004685.1 + 57037 0.69 0.328293
Target:  5'- cACCuuGAcccGCCCGGCG---GCGAGCAg -3'
miRNA:   3'- cUGGggCU---UGGGCCGCgucUGCUCGU- -5'
19264 3' -61 NC_004685.1 + 68340 0.69 0.326025
Target:  5'- cGCCCCGggUCCGugugugcgugcgccGCGCGGGucCGAGUg -3'
miRNA:   3'- cUGGGGCuuGGGC--------------CGCGUCU--GCUCGu -5'
19264 3' -61 NC_004685.1 + 39978 0.69 0.320776
Target:  5'- aGACCCUGAcCCUGGCGCAccgGACccGCu -3'
miRNA:   3'- -CUGGGGCUuGGGCCGCGU---CUGcuCGu -5'
19264 3' -61 NC_004685.1 + 61506 0.69 0.313388
Target:  5'- -uCCUCGAACCCGGCcucguGCGcGGCG-GCAa -3'
miRNA:   3'- cuGGGGCUUGGGCCG-----CGU-CUGCuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.