miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19264 5' -54.9 NC_004685.1 + 69453 1.08 0.001619
Target:  5'- gUGUGCGCGUUCGUCAAACGCGGGCAGu -3'
miRNA:   3'- -ACACGCGCAAGCAGUUUGCGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 26003 0.76 0.260097
Target:  5'- gGUGCGCagccggUCGcCGAGCGCGGGcCGGa -3'
miRNA:   3'- aCACGCGca----AGCaGUUUGCGCCC-GUC- -5'
19264 5' -54.9 NC_004685.1 + 45200 0.75 0.287512
Target:  5'- aUGUGCGCGaacaggUCGUC--GCGCGGGUu- -3'
miRNA:   3'- -ACACGCGCa-----AGCAGuuUGCGCCCGuc -5'
19264 5' -54.9 NC_004685.1 + 66913 0.72 0.445946
Target:  5'- aUGUGCGgGUgggucacggucaCGUCAGcguugguCGCGGGCAGc -3'
miRNA:   3'- -ACACGCgCAa-----------GCAGUUu------GCGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 68138 0.71 0.477429
Target:  5'- --cGCGCG-UCG-CGcACGCGGGCAa -3'
miRNA:   3'- acaCGCGCaAGCaGUuUGCGCCCGUc -5'
19264 5' -54.9 NC_004685.1 + 26546 0.71 0.477429
Target:  5'- gGUGCGCG-UCGcCAGgaucGCGCuGGGCGa -3'
miRNA:   3'- aCACGCGCaAGCaGUU----UGCG-CCCGUc -5'
19264 5' -54.9 NC_004685.1 + 37624 0.7 0.571085
Target:  5'- --gGCGCGUUCcccagCGAuucgguCGCGGGCGGc -3'
miRNA:   3'- acaCGCGCAAGca---GUUu-----GCGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 31688 0.69 0.614261
Target:  5'- gGUcGCGCccugCGUCAccaccaGGCGCGGGCGa -3'
miRNA:   3'- aCA-CGCGcaa-GCAGU------UUGCGCCCGUc -5'
19264 5' -54.9 NC_004685.1 + 34106 0.69 0.614261
Target:  5'- gGUGaa-GUUCGgcccccugGAGCGCGGGCAGg -3'
miRNA:   3'- aCACgcgCAAGCag------UUUGCGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 34002 0.69 0.625114
Target:  5'- aUGcUGCGCcg-CGUC-AACGUGGGCGa -3'
miRNA:   3'- -AC-ACGCGcaaGCAGuUUGCGCCCGUc -5'
19264 5' -54.9 NC_004685.1 + 37789 0.69 0.635974
Target:  5'- cUGUcgGUGUUCGUCAAaugggcugacuACGUGGGCAc -3'
miRNA:   3'- -ACAcgCGCAAGCAGUU-----------UGCGCCCGUc -5'
19264 5' -54.9 NC_004685.1 + 32251 0.68 0.657673
Target:  5'- cUGaaCGCGgccgCGUCGgccgccgguGGCGCGGGCGGu -3'
miRNA:   3'- -ACacGCGCaa--GCAGU---------UUGCGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 47537 0.68 0.657673
Target:  5'- gGUGaGCGcgCGgugccaGGugGCGGGCAGg -3'
miRNA:   3'- aCACgCGCaaGCag----UUugCGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 18051 0.68 0.679279
Target:  5'- gGUG-GUG-UCGUUcGACGcCGGGCAGa -3'
miRNA:   3'- aCACgCGCaAGCAGuUUGC-GCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 68432 0.68 0.679279
Target:  5'- --cGCGCGUagGUCcGAUGCGGGg-- -3'
miRNA:   3'- acaCGCGCAagCAGuUUGCGCCCguc -5'
19264 5' -54.9 NC_004685.1 + 919 0.68 0.679279
Target:  5'- gGUGauCGcCGUUCGUaCAGGCcgcaguccuGCGGGCGGa -3'
miRNA:   3'- aCAC--GC-GCAAGCA-GUUUG---------CGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 62677 0.68 0.690022
Target:  5'- -uUGcCGCGacCGUC--GCGCGGGUAGc -3'
miRNA:   3'- acAC-GCGCaaGCAGuuUGCGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 68352 0.68 0.690022
Target:  5'- gUGUGUGCGUgCGcC--GCGCGGGUc- -3'
miRNA:   3'- -ACACGCGCAaGCaGuuUGCGCCCGuc -5'
19264 5' -54.9 NC_004685.1 + 18181 0.67 0.711335
Target:  5'- gGUGuCGUGUaCGUgGAGC-CGGGCAa -3'
miRNA:   3'- aCAC-GCGCAaGCAgUUUGcGCCCGUc -5'
19264 5' -54.9 NC_004685.1 + 49097 0.67 0.752963
Target:  5'- --cGCGCGUcgugcUCGUCG-ACGCaGuGCAGg -3'
miRNA:   3'- acaCGCGCA-----AGCAGUuUGCGcC-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.