miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19264 5' -54.9 NC_004685.1 + 22272 0.67 0.763098
Target:  5'- gGUGCGC--UgGUCG---GCGGGCGGg -3'
miRNA:   3'- aCACGCGcaAgCAGUuugCGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 64861 0.66 0.773102
Target:  5'- cGUGCGCcgaagguagUCGuUCAGGCGaucaaGGGCAu -3'
miRNA:   3'- aCACGCGca-------AGC-AGUUUGCg----CCCGUc -5'
19264 5' -54.9 NC_004685.1 + 59 0.66 0.782964
Target:  5'- --cGUGCGUUCGagCcGGgGCGGGCGc -3'
miRNA:   3'- acaCGCGCAAGCa-GuUUgCGCCCGUc -5'
19264 5' -54.9 NC_004685.1 + 40862 0.66 0.782964
Target:  5'- --aGCGCGgugcuggCGUCGcgggccGCGCGGGCc- -3'
miRNA:   3'- acaCGCGCaa-----GCAGUu-----UGCGCCCGuc -5'
19264 5' -54.9 NC_004685.1 + 64900 0.66 0.782964
Target:  5'- --gGCGCGUgc-UCGAAgUGCGGGCAc -3'
miRNA:   3'- acaCGCGCAagcAGUUU-GCGCCCGUc -5'
19264 5' -54.9 NC_004685.1 + 3968 0.66 0.811594
Target:  5'- --gGCGCGguccagaaGUC---CGCGGGCAGa -3'
miRNA:   3'- acaCGCGCaag-----CAGuuuGCGCCCGUC- -5'
19264 5' -54.9 NC_004685.1 + 1906 0.66 0.811594
Target:  5'- cGUGCccgcugcggccGCGguuggCGUCAGcggcgacggGCGUGGGCAa -3'
miRNA:   3'- aCACG-----------CGCaa---GCAGUU---------UGCGCCCGUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.