Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19264 | 5' | -54.9 | NC_004685.1 | + | 64861 | 0.66 | 0.773102 |
Target: 5'- cGUGCGCcgaagguagUCGuUCAGGCGaucaaGGGCAu -3' miRNA: 3'- aCACGCGca-------AGC-AGUUUGCg----CCCGUc -5' |
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19264 | 5' | -54.9 | NC_004685.1 | + | 64900 | 0.66 | 0.782964 |
Target: 5'- --gGCGCGUgc-UCGAAgUGCGGGCAc -3' miRNA: 3'- acaCGCGCAagcAGUUU-GCGCCCGUc -5' |
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19264 | 5' | -54.9 | NC_004685.1 | + | 66913 | 0.72 | 0.445946 |
Target: 5'- aUGUGCGgGUgggucacggucaCGUCAGcguugguCGCGGGCAGc -3' miRNA: 3'- -ACACGCgCAa-----------GCAGUUu------GCGCCCGUC- -5' |
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19264 | 5' | -54.9 | NC_004685.1 | + | 68138 | 0.71 | 0.477429 |
Target: 5'- --cGCGCG-UCG-CGcACGCGGGCAa -3' miRNA: 3'- acaCGCGCaAGCaGUuUGCGCCCGUc -5' |
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19264 | 5' | -54.9 | NC_004685.1 | + | 68352 | 0.68 | 0.690022 |
Target: 5'- gUGUGUGCGUgCGcC--GCGCGGGUc- -3' miRNA: 3'- -ACACGCGCAaGCaGuuUGCGCCCGuc -5' |
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19264 | 5' | -54.9 | NC_004685.1 | + | 68432 | 0.68 | 0.679279 |
Target: 5'- --cGCGCGUagGUCcGAUGCGGGg-- -3' miRNA: 3'- acaCGCGCAagCAGuUUGCGCCCguc -5' |
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19264 | 5' | -54.9 | NC_004685.1 | + | 69453 | 1.08 | 0.001619 |
Target: 5'- gUGUGCGCGUUCGUCAAACGCGGGCAGu -3' miRNA: 3'- -ACACGCGCAAGCAGUUUGCGCCCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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