miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19266 3' -55.6 NC_004685.1 + 21623 0.66 0.734726
Target:  5'- cGAGUGCuucgAGCaGCGGGUCG-GCAcccugcAGGUg -3'
miRNA:   3'- -UUCACG----UCGaCGCCUAGUgCGU------UCCG- -5'
19266 3' -55.6 NC_004685.1 + 25633 0.66 0.702639
Target:  5'- cAGGUcGCGGUugguugGCGuGGUCAUGgCAGGGCc -3'
miRNA:   3'- -UUCA-CGUCGa-----CGC-CUAGUGC-GUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 26545 0.72 0.371554
Target:  5'- cGGUGCGcGUcGCcaGGAUCGCGCuGGGCg -3'
miRNA:   3'- uUCACGU-CGaCG--CCUAGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 26931 0.66 0.713419
Target:  5'- uAG-GCGGuCUGCGGGgg-UGCAGGGUg -3'
miRNA:   3'- uUCaCGUC-GACGCCUaguGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 34138 0.82 0.087866
Target:  5'- uGGUGCAGCUGCGcagcGAUcCGCGCAAGcGCg -3'
miRNA:   3'- uUCACGUCGACGC----CUA-GUGCGUUC-CG- -5'
19266 3' -55.6 NC_004685.1 + 36894 0.7 0.4558
Target:  5'- ---cGCGGCcGCGGG-CACGUcGGGCa -3'
miRNA:   3'- uucaCGUCGaCGCCUaGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 38653 0.66 0.679791
Target:  5'- ---aGCAGCUGUGGcaGUCGCccaacguGguGGGCg -3'
miRNA:   3'- uucaCGUCGACGCC--UAGUG-------CguUCCG- -5'
19266 3' -55.6 NC_004685.1 + 40866 0.69 0.538569
Target:  5'- cGGUGCuGGCgucGCGGGcCGCGC-GGGCc -3'
miRNA:   3'- uUCACG-UCGa--CGCCUaGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 45529 0.67 0.6369
Target:  5'- -cGUGCugAGC-GCGGugAUCACGC-GGGCc -3'
miRNA:   3'- uuCACG--UCGaCGCC--UAGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 45739 0.67 0.6369
Target:  5'- ----aCGGCaGCGGGUCGC-CGGGGCg -3'
miRNA:   3'- uucacGUCGaCGCCUAGUGcGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 51164 0.73 0.321593
Target:  5'- ---cGCGGUUGCGGA-CGCGCAccgaauccucgGGGCu -3'
miRNA:   3'- uucaCGUCGACGCCUaGUGCGU-----------UCCG- -5'
19266 3' -55.6 NC_004685.1 + 53221 0.67 0.647929
Target:  5'- uAGGU-CAGCgaGCcGGUCGCGCcGGGCa -3'
miRNA:   3'- -UUCAcGUCGa-CGcCUAGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 55329 0.67 0.658942
Target:  5'- gGGGUGCGG-UGCGGG-CACGaCGgguuGGCg -3'
miRNA:   3'- -UUCACGUCgACGCCUaGUGC-GUu---CCG- -5'
19266 3' -55.6 NC_004685.1 + 56808 0.69 0.549308
Target:  5'- cGAGgGCAGCaGCGGAUUggGCGgCGAGaGCu -3'
miRNA:   3'- -UUCaCGUCGaCGCCUAG--UGC-GUUC-CG- -5'
19266 3' -55.6 NC_004685.1 + 57929 0.67 0.658942
Target:  5'- -cGUGCAGCUccucGCGGcgcuccAUCGgGCAcagcGGGCc -3'
miRNA:   3'- uuCACGUCGA----CGCC------UAGUgCGU----UCCG- -5'
19266 3' -55.6 NC_004685.1 + 59580 0.67 0.658942
Target:  5'- cAG-GCGGCgGCGGGUgaGCGCAccGGCu -3'
miRNA:   3'- uUCaCGUCGaCGCCUAg-UGCGUu-CCG- -5'
19266 3' -55.6 NC_004685.1 + 60414 0.73 0.337671
Target:  5'- --cUGCAGCUGuuGAcgcaUCACGCGGGGUu -3'
miRNA:   3'- uucACGUCGACgcCU----AGUGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 60586 0.73 0.306094
Target:  5'- cGGUGCAGUUcGCGGAUCGgcuucaacaccuCGC-GGGCa -3'
miRNA:   3'- uUCACGUCGA-CGCCUAGU------------GCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 61946 0.72 0.37949
Target:  5'- -cGUGCacguccuGGCUGCGGGccUCGcCGCAcAGGCa -3'
miRNA:   3'- uuCACG-------UCGACGCCU--AGU-GCGU-UCCG- -5'
19266 3' -55.6 NC_004685.1 + 63757 0.67 0.647929
Target:  5'- cGAGUGCAGCgucGCgccgcgagGGAUgaACGCGAuGGCc -3'
miRNA:   3'- -UUCACGUCGa--CG--------CCUAg-UGCGUU-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.