Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19266 | 3' | -55.6 | NC_004685.1 | + | 941 | 0.66 | 0.691791 |
Target: 5'- ---cGCAGUccUGCGGGcggAUGCGGGGCa -3' miRNA: 3'- uucaCGUCG--ACGCCUag-UGCGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 990 | 0.68 | 0.591743 |
Target: 5'- uGGGUGCAGCggaucgGUGGuugccguUCACGUAgaaguacAGGCc -3' miRNA: 3'- -UUCACGUCGa-----CGCCu------AGUGCGU-------UCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 1083 | 0.66 | 0.691791 |
Target: 5'- ---cGCAGUccUGCGGGcggAUGCGGGGCa -3' miRNA: 3'- uucaCGUCG--ACGCCUag-UGCGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 1240 | 0.7 | 0.445928 |
Target: 5'- cGGUGCAcguGCccgaUGuCGGAUCcggcuACGCAGGGCa -3' miRNA: 3'- uUCACGU---CG----AC-GCCUAG-----UGCGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 2923 | 0.67 | 0.668834 |
Target: 5'- cGGUGCGGCggGCcaguucuuggucuGGAUgCACGCAGcGGUc -3' miRNA: 3'- uUCACGUCGa-CG-------------CCUA-GUGCGUU-CCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 4469 | 0.66 | 0.723053 |
Target: 5'- -cGU-CAGCguUGCGGGUgcaugcgCugGCGGGGCa -3' miRNA: 3'- uuCAcGUCG--ACGCCUA-------GugCGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 5660 | 0.66 | 0.691791 |
Target: 5'- cAGU-CAGCUGCGGAacUCGC-CAaccAGGUg -3' miRNA: 3'- uUCAcGUCGACGCCU--AGUGcGU---UCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 8842 | 0.67 | 0.658942 |
Target: 5'- -uGUGCGGCagGCGG-UCAcCGC-GGGUg -3' miRNA: 3'- uuCACGUCGa-CGCCuAGU-GCGuUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 12036 | 0.66 | 0.713419 |
Target: 5'- -cGUGaAGCUcGCGG-UCAacgcggccCGCGAGGCg -3' miRNA: 3'- uuCACgUCGA-CGCCuAGU--------GCGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 12651 | 0.67 | 0.674317 |
Target: 5'- ---cGCcGCcggGCGGGUCAaggugaaggucggccCGCAGGGCg -3' miRNA: 3'- uucaCGuCGa--CGCCUAGU---------------GCGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 13952 | 0.66 | 0.685253 |
Target: 5'- cGGUGCAgGCguacgccaagccgaGCGGGUCGCGCcguucauccgcAAGGUc -3' miRNA: 3'- uUCACGU-CGa-------------CGCCUAGUGCG-----------UUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 15110 | 0.68 | 0.59284 |
Target: 5'- cGGGUGU-GCUGCucGAUCACGCGucggauGGCc -3' miRNA: 3'- -UUCACGuCGACGc-CUAGUGCGUu-----CCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 16758 | 0.67 | 0.625867 |
Target: 5'- ---aGCAGCUGUccgagGcGAUCacugccaagGCGCAGGGCg -3' miRNA: 3'- uucaCGUCGACG-----C-CUAG---------UGCGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 17491 | 0.66 | 0.723053 |
Target: 5'- cGGGUGUAgcgccacGCUGCGGGgagCACGUcuucccguGGCg -3' miRNA: 3'- -UUCACGU-------CGACGCCUa--GUGCGuu------CCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 18317 | 0.68 | 0.581886 |
Target: 5'- cGGUGCAG--GUGGcccuGUCGCGCAGGGa -3' miRNA: 3'- uUCACGUCgaCGCC----UAGUGCGUUCCg -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 20021 | 0.66 | 0.691791 |
Target: 5'- cGAGUcgGGCgacccgccgggGCGGAUCAuCGCGGGGUu -3' miRNA: 3'- -UUCAcgUCGa----------CGCCUAGU-GCGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 20407 | 0.66 | 0.680884 |
Target: 5'- uGGGUGCAGgaGagGGAgacCGC-CAAGGCg -3' miRNA: 3'- -UUCACGUCgaCg-CCUa--GUGcGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 20723 | 0.67 | 0.6369 |
Target: 5'- aGGGUGauccggucaAGgUGCGGAUCAgGCugccgcuaGAGGCg -3' miRNA: 3'- -UUCACg--------UCgACGCCUAGUgCG--------UUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 20835 | 0.66 | 0.691791 |
Target: 5'- uGGUG-AGUacaugcucgacaUGUGGAacagCGCGCAGGGCa -3' miRNA: 3'- uUCACgUCG------------ACGCCUa---GUGCGUUCCG- -5' |
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19266 | 3' | -55.6 | NC_004685.1 | + | 21300 | 0.69 | 0.517317 |
Target: 5'- ----aCAGCUGUGGuggCGCGgCGAGGCg -3' miRNA: 3'- uucacGUCGACGCCua-GUGC-GUUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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