miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19266 3' -55.6 NC_004685.1 + 68563 1.09 0.000935
Target:  5'- cAAGUGCAGCUGCGGAUCACGCAAGGCu -3'
miRNA:   3'- -UUCACGUCGACGCCUAGUGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 34138 0.82 0.087866
Target:  5'- uGGUGCAGCUGCGcagcGAUcCGCGCAAGcGCg -3'
miRNA:   3'- uUCACGUCGACGC----CUA-GUGCGUUC-CG- -5'
19266 3' -55.6 NC_004685.1 + 60586 0.73 0.306094
Target:  5'- cGGUGCAGUUcGCGGAUCGgcuucaacaccuCGC-GGGCa -3'
miRNA:   3'- uUCACGUCGA-CGCCUAGU------------GCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 51164 0.73 0.321593
Target:  5'- ---cGCGGUUGCGGA-CGCGCAccgaauccucgGGGCu -3'
miRNA:   3'- uucaCGUCGACGCCUaGUGCGU-----------UCCG- -5'
19266 3' -55.6 NC_004685.1 + 60414 0.73 0.337671
Target:  5'- --cUGCAGCUGuuGAcgcaUCACGCGGGGUu -3'
miRNA:   3'- uucACGUCGACgcCU----AGUGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 26545 0.72 0.371554
Target:  5'- cGGUGCGcGUcGCcaGGAUCGCGCuGGGCg -3'
miRNA:   3'- uUCACGU-CGaCG--CCUAGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 61946 0.72 0.37949
Target:  5'- -cGUGCacguccuGGCUGCGGGccUCGcCGCAcAGGCa -3'
miRNA:   3'- uuCACG-------UCGACGCCU--AGU-GCGU-UCCG- -5'
19266 3' -55.6 NC_004685.1 + 1240 0.7 0.445928
Target:  5'- cGGUGCAcguGCccgaUGuCGGAUCcggcuACGCAGGGCa -3'
miRNA:   3'- uUCACGU---CG----AC-GCCUAG-----UGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 36894 0.7 0.4558
Target:  5'- ---cGCGGCcGCGGG-CACGUcGGGCa -3'
miRNA:   3'- uucaCGUCGaCGCCUaGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 21300 0.69 0.517317
Target:  5'- ----aCAGCUGUGGuggCGCGgCGAGGCg -3'
miRNA:   3'- uucacGUCGACGCCua-GUGC-GUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 40866 0.69 0.538569
Target:  5'- cGGUGCuGGCgucGCGGGcCGCGC-GGGCc -3'
miRNA:   3'- uUCACG-UCGa--CGCCUaGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 56808 0.69 0.549308
Target:  5'- cGAGgGCAGCaGCGGAUUggGCGgCGAGaGCu -3'
miRNA:   3'- -UUCaCGUCGaCGCCUAG--UGC-GUUC-CG- -5'
19266 3' -55.6 NC_004685.1 + 18317 0.68 0.581886
Target:  5'- cGGUGCAG--GUGGcccuGUCGCGCAGGGa -3'
miRNA:   3'- uUCACGUCgaCGCC----UAGUGCGUUCCg -5'
19266 3' -55.6 NC_004685.1 + 990 0.68 0.591743
Target:  5'- uGGGUGCAGCggaucgGUGGuugccguUCACGUAgaaguacAGGCc -3'
miRNA:   3'- -UUCACGUCGa-----CGCCu------AGUGCGU-------UCCG- -5'
19266 3' -55.6 NC_004685.1 + 15110 0.68 0.59284
Target:  5'- cGGGUGU-GCUGCucGAUCACGCGucggauGGCc -3'
miRNA:   3'- -UUCACGuCGACGc-CUAGUGCGUu-----CCG- -5'
19266 3' -55.6 NC_004685.1 + 16758 0.67 0.625867
Target:  5'- ---aGCAGCUGUccgagGcGAUCacugccaagGCGCAGGGCg -3'
miRNA:   3'- uucaCGUCGACG-----C-CUAG---------UGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 45739 0.67 0.6369
Target:  5'- ----aCGGCaGCGGGUCGC-CGGGGCg -3'
miRNA:   3'- uucacGUCGaCGCCUAGUGcGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 45529 0.67 0.6369
Target:  5'- -cGUGCugAGC-GCGGugAUCACGC-GGGCc -3'
miRNA:   3'- uuCACG--UCGaCGCC--UAGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 20723 0.67 0.6369
Target:  5'- aGGGUGauccggucaAGgUGCGGAUCAgGCugccgcuaGAGGCg -3'
miRNA:   3'- -UUCACg--------UCgACGCCUAGUgCG--------UUCCG- -5'
19266 3' -55.6 NC_004685.1 + 63757 0.67 0.647929
Target:  5'- cGAGUGCAGCgucGCgccgcgagGGAUgaACGCGAuGGCc -3'
miRNA:   3'- -UUCACGUCGa--CG--------CCUAg-UGCGUU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.