miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19266 3' -55.6 NC_004685.1 + 21623 0.66 0.734726
Target:  5'- cGAGUGCuucgAGCaGCGGGUCG-GCAcccugcAGGUg -3'
miRNA:   3'- -UUCACG----UCGaCGCCUAGUgCGU------UCCG- -5'
19266 3' -55.6 NC_004685.1 + 38653 0.66 0.679791
Target:  5'- ---aGCAGCUGUGGcaGUCGCccaacguGguGGGCg -3'
miRNA:   3'- uucaCGUCGACGCC--UAGUG-------CguUCCG- -5'
19266 3' -55.6 NC_004685.1 + 13952 0.66 0.685253
Target:  5'- cGGUGCAgGCguacgccaagccgaGCGGGUCGCGCcguucauccgcAAGGUc -3'
miRNA:   3'- uUCACGU-CGa-------------CGCCUAGUGCG-----------UUCCG- -5'
19266 3' -55.6 NC_004685.1 + 941 0.66 0.691791
Target:  5'- ---cGCAGUccUGCGGGcggAUGCGGGGCa -3'
miRNA:   3'- uucaCGUCG--ACGCCUag-UGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 1083 0.66 0.691791
Target:  5'- ---cGCAGUccUGCGGGcggAUGCGGGGCa -3'
miRNA:   3'- uucaCGUCG--ACGCCUag-UGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 5660 0.66 0.691791
Target:  5'- cAGU-CAGCUGCGGAacUCGC-CAaccAGGUg -3'
miRNA:   3'- uUCAcGUCGACGCCU--AGUGcGU---UCCG- -5'
19266 3' -55.6 NC_004685.1 + 20835 0.66 0.691791
Target:  5'- uGGUG-AGUacaugcucgacaUGUGGAacagCGCGCAGGGCa -3'
miRNA:   3'- uUCACgUCG------------ACGCCUa---GUGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 25633 0.66 0.702639
Target:  5'- cAGGUcGCGGUugguugGCGuGGUCAUGgCAGGGCc -3'
miRNA:   3'- -UUCA-CGUCGa-----CGC-CUAGUGC-GUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 66249 0.66 0.713419
Target:  5'- ---cGCAacgaucGCaGCGGGUCAgcCGCAGGGUg -3'
miRNA:   3'- uucaCGU------CGaCGCCUAGU--GCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 2923 0.67 0.668834
Target:  5'- cGGUGCGGCggGCcaguucuuggucuGGAUgCACGCAGcGGUc -3'
miRNA:   3'- uUCACGUCGa-CG-------------CCUA-GUGCGUU-CCG- -5'
19266 3' -55.6 NC_004685.1 + 59580 0.67 0.658942
Target:  5'- cAG-GCGGCgGCGGGUgaGCGCAccGGCu -3'
miRNA:   3'- uUCaCGUCGaCGCCUAg-UGCGUu-CCG- -5'
19266 3' -55.6 NC_004685.1 + 57929 0.67 0.658942
Target:  5'- -cGUGCAGCUccucGCGGcgcuccAUCGgGCAcagcGGGCc -3'
miRNA:   3'- uuCACGUCGA----CGCC------UAGUgCGU----UCCG- -5'
19266 3' -55.6 NC_004685.1 + 60586 0.73 0.306094
Target:  5'- cGGUGCAGUUcGCGGAUCGgcuucaacaccuCGC-GGGCa -3'
miRNA:   3'- uUCACGUCGA-CGCCUAGU------------GCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 26545 0.72 0.371554
Target:  5'- cGGUGCGcGUcGCcaGGAUCGCGCuGGGCg -3'
miRNA:   3'- uUCACGU-CGaCG--CCUAGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 61946 0.72 0.37949
Target:  5'- -cGUGCacguccuGGCUGCGGGccUCGcCGCAcAGGCa -3'
miRNA:   3'- uuCACG-------UCGACGCCU--AGU-GCGU-UCCG- -5'
19266 3' -55.6 NC_004685.1 + 1240 0.7 0.445928
Target:  5'- cGGUGCAcguGCccgaUGuCGGAUCcggcuACGCAGGGCa -3'
miRNA:   3'- uUCACGU---CG----AC-GCCUAG-----UGCGUUCCG- -5'
19266 3' -55.6 NC_004685.1 + 36894 0.7 0.4558
Target:  5'- ---cGCGGCcGCGGG-CACGUcGGGCa -3'
miRNA:   3'- uucaCGUCGaCGCCUaGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 990 0.68 0.591743
Target:  5'- uGGGUGCAGCggaucgGUGGuugccguUCACGUAgaaguacAGGCc -3'
miRNA:   3'- -UUCACGUCGa-----CGCCu------AGUGCGU-------UCCG- -5'
19266 3' -55.6 NC_004685.1 + 45529 0.67 0.6369
Target:  5'- -cGUGCugAGC-GCGGugAUCACGC-GGGCc -3'
miRNA:   3'- uuCACG--UCGaCGCC--UAGUGCGuUCCG- -5'
19266 3' -55.6 NC_004685.1 + 8842 0.67 0.658942
Target:  5'- -uGUGCGGCagGCGG-UCAcCGC-GGGUg -3'
miRNA:   3'- uuCACGUCGa-CGCCuAGU-GCGuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.