miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19267 3' -60.8 NC_004685.1 + 63246 0.67 0.46704
Target:  5'- --cGGGCUguuCGGGCcaggugaugcccuugGCGCCGCCGGa -3'
miRNA:   3'- aguCCCGAagcGCCUG---------------CGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 13139 0.67 0.463253
Target:  5'- --cGGGCgaCGCGGA-GgGCCGCCu- -3'
miRNA:   3'- aguCCCGaaGCGCCUgCgUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 13758 0.67 0.453856
Target:  5'- --cGGGCUgcuGCuGGCGUACCGCCc- -3'
miRNA:   3'- aguCCCGAag-CGcCUGCGUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 43632 0.67 0.444564
Target:  5'- cCAGGGCcgacaGCGGuCGCcgucGCUGCCGc -3'
miRNA:   3'- aGUCCCGaag--CGCCuGCG----UGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 30978 0.67 0.444564
Target:  5'- aCAGGGCa--GCGGuuGUAUgCGCCGGg -3'
miRNA:   3'- aGUCCCGaagCGCCugCGUG-GCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 19190 0.67 0.444564
Target:  5'- gUCGGGGCacaUCGC--ACGCGCCGaCCa- -3'
miRNA:   3'- -AGUCCCGa--AGCGccUGCGUGGC-GGcu -5'
19267 3' -60.8 NC_004685.1 + 11837 0.67 0.444564
Target:  5'- ---uGGCcgagUUgGUGGGCGCgACCGCCGAc -3'
miRNA:   3'- agucCCG----AAgCGCCUGCG-UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 43221 0.67 0.444564
Target:  5'- uUCuGGGUggagGCGGGCaGCACCacGCCGGu -3'
miRNA:   3'- -AGuCCCGaag-CGCCUG-CGUGG--CGGCU- -5'
19267 3' -60.8 NC_004685.1 + 22704 0.67 0.435379
Target:  5'- cCGcGGUcggCGUGGACGaggcCACCGCCGAg -3'
miRNA:   3'- aGUcCCGaa-GCGCCUGC----GUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 57963 0.67 0.435379
Target:  5'- --cGGGCcgugCGCGGugucaGCGCACaGCCGGg -3'
miRNA:   3'- aguCCCGaa--GCGCC-----UGCGUGgCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 12808 0.67 0.417344
Target:  5'- -gAGcGGCUg-GCGGGcCGUGCCGUCGAc -3'
miRNA:   3'- agUC-CCGAagCGCCU-GCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 2863 0.68 0.408499
Target:  5'- gCAGGGCgugacCGCGGGCuGCuACgGcCCGAc -3'
miRNA:   3'- aGUCCCGaa---GCGCCUG-CG-UGgC-GGCU- -5'
19267 3' -60.8 NC_004685.1 + 20868 0.68 0.408499
Target:  5'- gCAGGGCaaCGCca--GCGCCGCUGAu -3'
miRNA:   3'- aGUCCCGaaGCGccugCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 31118 0.68 0.399772
Target:  5'- -aAGGGCcUCGC--AgGCAUCGCCGAg -3'
miRNA:   3'- agUCCCGaAGCGccUgCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 18830 0.68 0.397178
Target:  5'- ---cGGCU--GCGGcuguacaggcaggcGCGCACCGCCGAg -3'
miRNA:   3'- agucCCGAagCGCC--------------UGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 31603 0.68 0.391166
Target:  5'- cCGGGGCaUCGacuGGACGgGuCCGaCCGAg -3'
miRNA:   3'- aGUCCCGaAGCg--CCUGCgU-GGC-GGCU- -5'
19267 3' -60.8 NC_004685.1 + 48415 0.68 0.382681
Target:  5'- cCAGGGCcucggucUCGauGGCGUACUGCUGGc -3'
miRNA:   3'- aGUCCCGa------AGCgcCUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 12002 0.68 0.382681
Target:  5'- -uGGGGCagaugcucUCGcCGGACGCcaaCGCCGAc -3'
miRNA:   3'- agUCCCGa-------AGC-GCCUGCGug-GCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 18003 0.68 0.382681
Target:  5'- cCAGGuGCUgaccucCGCGGGCaccgacgagGCGCUGCCGc -3'
miRNA:   3'- aGUCC-CGAa-----GCGCCUG---------CGUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 45298 0.68 0.374319
Target:  5'- gUCGGGGCcgcgguugUCGCGGAucaggauugcCGCcaacCCGCCGc -3'
miRNA:   3'- -AGUCCCGa-------AGCGCCU----------GCGu---GGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.