miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19267 3' -60.8 NC_004685.1 + 31603 0.68 0.391166
Target:  5'- cCGGGGCaUCGacuGGACGgGuCCGaCCGAg -3'
miRNA:   3'- aGUCCCGaAGCg--CCUGCgU-GGC-GGCU- -5'
19267 3' -60.8 NC_004685.1 + 18830 0.68 0.397178
Target:  5'- ---cGGCU--GCGGcuguacaggcaggcGCGCACCGCCGAg -3'
miRNA:   3'- agucCCGAagCGCC--------------UGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 31118 0.68 0.399772
Target:  5'- -aAGGGCcUCGC--AgGCAUCGCCGAg -3'
miRNA:   3'- agUCCCGaAGCGccUgCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 20868 0.68 0.408499
Target:  5'- gCAGGGCaaCGCca--GCGCCGCUGAu -3'
miRNA:   3'- aGUCCCGaaGCGccugCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 57963 0.67 0.435379
Target:  5'- --cGGGCcgugCGCGGugucaGCGCACaGCCGGg -3'
miRNA:   3'- aguCCCGaa--GCGCC-----UGCGUGgCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 7160 0.66 0.492033
Target:  5'- gCGGGGUggccaUCGCGGugucCGaGCCGUCGGg -3'
miRNA:   3'- aGUCCCGa----AGCGCCu---GCgUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 67870 0.66 0.492033
Target:  5'- aCAuGGGa-UCGCGG-CGCGCCGgCGu -3'
miRNA:   3'- aGU-CCCgaAGCGCCuGCGUGGCgGCu -5'
19267 3' -60.8 NC_004685.1 + 63246 0.67 0.46704
Target:  5'- --cGGGCUguuCGGGCcaggugaugcccuugGCGCCGCCGGa -3'
miRNA:   3'- aguCCCGAagcGCCUG---------------CGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 43221 0.67 0.444564
Target:  5'- uUCuGGGUggagGCGGGCaGCACCacGCCGGu -3'
miRNA:   3'- -AGuCCCGaag-CGCCUG-CGUGG--CGGCU- -5'
19267 3' -60.8 NC_004685.1 + 43632 0.67 0.444564
Target:  5'- cCAGGGCcgacaGCGGuCGCcgucGCUGCCGc -3'
miRNA:   3'- aGUCCCGaag--CGCCuGCG----UGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 30978 0.67 0.444564
Target:  5'- aCAGGGCa--GCGGuuGUAUgCGCCGGg -3'
miRNA:   3'- aGUCCCGaagCGCCugCGUG-GCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 18176 0.66 0.492033
Target:  5'- cUCAGGGUgUCGUGuACGUGgaGCCGGg -3'
miRNA:   3'- -AGUCCCGaAGCGCcUGCGUggCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 34245 0.66 0.50181
Target:  5'- aCccGGCcacgUCGaccaccuGACGCACCGCCGAg -3'
miRNA:   3'- aGucCCGa---AGCgc-----CUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 37598 0.66 0.50181
Target:  5'- uUCGGGGUgccCGgGGGaaccUGC-CCGCCGGu -3'
miRNA:   3'- -AGUCCCGaa-GCgCCU----GCGuGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 65368 0.66 0.50181
Target:  5'- cCuGcGGC-UCGCGGAgagGC-CCGCCGAg -3'
miRNA:   3'- aGuC-CCGaAGCGCCUg--CGuGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 55148 0.66 0.502792
Target:  5'- gUCGGGGCUcaugucgagcaccagCGCGG-CGCG-CGUCGGc -3'
miRNA:   3'- -AGUCCCGAa--------------GCGCCuGCGUgGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 8648 0.66 0.508704
Target:  5'- -uGGGGCUaUCGCGGcgacacugagugcgGCacgacgauguGCAUCGCCGGc -3'
miRNA:   3'- agUCCCGA-AGCGCC--------------UG----------CGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 45753 0.66 0.511671
Target:  5'- cCGGGGCggCGCGuGuuCGCugCGCgGu -3'
miRNA:   3'- aGUCCCGaaGCGC-Cu-GCGugGCGgCu -5'
19267 3' -60.8 NC_004685.1 + 18130 0.66 0.521611
Target:  5'- uUCAGGGC-----GGugGCACCGaCCGc -3'
miRNA:   3'- -AGUCCCGaagcgCCugCGUGGC-GGCu -5'
19267 3' -60.8 NC_004685.1 + 68356 1.08 0.000471
Target:  5'- aUCAGGGCUUCGCGGACGCACCGCCGAc -3'
miRNA:   3'- -AGUCCCGAAGCGCCUGCGUGGCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.