miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19267 3' -60.8 NC_004685.1 + 58462 0.66 0.50181
Target:  5'- cUCGGuGGUgauUUCGCGG-C-CACCGUCGGc -3'
miRNA:   3'- -AGUC-CCG---AAGCGCCuGcGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 19190 0.67 0.444564
Target:  5'- gUCGGGGCacaUCGC--ACGCGCCGaCCa- -3'
miRNA:   3'- -AGUCCCGa--AGCGccUGCGUGGC-GGcu -5'
19267 3' -60.8 NC_004685.1 + 11837 0.67 0.444564
Target:  5'- ---uGGCcgagUUgGUGGGCGCgACCGCCGAc -3'
miRNA:   3'- agucCCG----AAgCGCCUGCG-UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 13758 0.67 0.453856
Target:  5'- --cGGGCUgcuGCuGGCGUACCGCCc- -3'
miRNA:   3'- aguCCCGAag-CGcCUGCGUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 13139 0.67 0.463253
Target:  5'- --cGGGCgaCGCGGA-GgGCCGCCu- -3'
miRNA:   3'- aguCCCGaaGCGCCUgCgUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 18056 0.66 0.47275
Target:  5'- gCAGGGCUUcacCGUGGGC-CACCugggcuucggGCCGc -3'
miRNA:   3'- aGUCCCGAA---GCGCCUGcGUGG----------CGGCu -5'
19267 3' -60.8 NC_004685.1 + 18768 0.66 0.47275
Target:  5'- --cGGGUggcCGUGGcGCGCaucugACCGCCGAg -3'
miRNA:   3'- aguCCCGaa-GCGCC-UGCG-----UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 37801 0.66 0.482345
Target:  5'- gUCAaauGGGCUgacuaCGUGG--GCACCGCCGc -3'
miRNA:   3'- -AGU---CCCGAa----GCGCCugCGUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 53533 0.66 0.492033
Target:  5'- aUCGaGGCUUUGCGGucguggcuuuCGCugaCGCCGAc -3'
miRNA:   3'- -AGUcCCGAAGCGCCu---------GCGug-GCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 22704 0.67 0.435379
Target:  5'- cCGcGGUcggCGUGGACGaggcCACCGCCGAg -3'
miRNA:   3'- aGUcCCGaa-GCGCCUGC----GUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 57963 0.67 0.435379
Target:  5'- --cGGGCcgugCGCGGugucaGCGCACaGCCGGg -3'
miRNA:   3'- aguCCCGaa--GCGCC-----UGCGUGgCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 20868 0.68 0.408499
Target:  5'- gCAGGGCaaCGCca--GCGCCGCUGAu -3'
miRNA:   3'- aGUCCCGaaGCGccugCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 58348 0.73 0.186532
Target:  5'- gUCGGGGCgggUCGcCGGucGCGCACgGCCc- -3'
miRNA:   3'- -AGUCCCGa--AGC-GCC--UGCGUGgCGGcu -5'
19267 3' -60.8 NC_004685.1 + 11409 0.72 0.228083
Target:  5'- --cGGGUUUCgGCGGugGcCGCCGCUGu -3'
miRNA:   3'- aguCCCGAAG-CGCCugC-GUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 62909 0.72 0.228083
Target:  5'- cCAGGGCgucaCGCaGACGCACCGgCu- -3'
miRNA:   3'- aGUCCCGaa--GCGcCUGCGUGGCgGcu -5'
19267 3' -60.8 NC_004685.1 + 50333 0.7 0.311986
Target:  5'- cCGGGGCcgacUUCGcCGcGGCGCAUCuuGCCGAu -3'
miRNA:   3'- aGUCCCG----AAGC-GC-CUGCGUGG--CGGCU- -5'
19267 3' -60.8 NC_004685.1 + 30120 0.69 0.35797
Target:  5'- -gGGGGCagugUCGCGGcCGCACUcgGCCc- -3'
miRNA:   3'- agUCCCGa---AGCGCCuGCGUGG--CGGcu -5'
19267 3' -60.8 NC_004685.1 + 31603 0.68 0.391166
Target:  5'- cCGGGGCaUCGacuGGACGgGuCCGaCCGAg -3'
miRNA:   3'- aGUCCCGaAGCg--CCUGCgU-GGC-GGCU- -5'
19267 3' -60.8 NC_004685.1 + 18830 0.68 0.397178
Target:  5'- ---cGGCU--GCGGcuguacaggcaggcGCGCACCGCCGAg -3'
miRNA:   3'- agucCCGAagCGCC--------------UGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 31118 0.68 0.399772
Target:  5'- -aAGGGCcUCGC--AgGCAUCGCCGAg -3'
miRNA:   3'- agUCCCGaAGCGccUgCGUGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.