Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19267 | 3' | -60.8 | NC_004685.1 | + | 50415 | 0.66 | 0.521611 |
Target: 5'- cCGGGGagUagGuCGGuGCGCACCGCCa- -3' miRNA: 3'- aGUCCCg-AagC-GCC-UGCGUGGCGGcu -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 48415 | 0.68 | 0.382681 |
Target: 5'- cCAGGGCcucggucUCGauGGCGUACUGCUGGc -3' miRNA: 3'- aGUCCCGa------AGCgcCUGCGUGGCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 12002 | 0.68 | 0.382681 |
Target: 5'- -uGGGGCagaugcucUCGcCGGACGCcaaCGCCGAc -3' miRNA: 3'- agUCCCGa-------AGC-GCCUGCGug-GCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 68356 | 1.08 | 0.000471 |
Target: 5'- aUCAGGGCUUCGCGGACGCACCGCCGAc -3' miRNA: 3'- -AGUCCCGAAGCGCCUGCGUGGCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 55148 | 0.66 | 0.502792 |
Target: 5'- gUCGGGGCUcaugucgagcaccagCGCGG-CGCG-CGUCGGc -3' miRNA: 3'- -AGUCCCGAa--------------GCGCCuGCGUgGCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 65368 | 0.66 | 0.50181 |
Target: 5'- cCuGcGGC-UCGCGGAgagGC-CCGCCGAg -3' miRNA: 3'- aGuC-CCGaAGCGCCUg--CGuGGCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 34245 | 0.66 | 0.50181 |
Target: 5'- aCccGGCcacgUCGaccaccuGACGCACCGCCGAg -3' miRNA: 3'- aGucCCGa---AGCgc-----CUGCGUGGCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 18176 | 0.66 | 0.492033 |
Target: 5'- cUCAGGGUgUCGUGuACGUGgaGCCGGg -3' miRNA: 3'- -AGUCCCGaAGCGCcUGCGUggCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 63246 | 0.67 | 0.46704 |
Target: 5'- --cGGGCUguuCGGGCcaggugaugcccuugGCGCCGCCGGa -3' miRNA: 3'- aguCCCGAagcGCCUG---------------CGUGGCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 2863 | 0.68 | 0.408499 |
Target: 5'- gCAGGGCgugacCGCGGGCuGCuACgGcCCGAc -3' miRNA: 3'- aGUCCCGaa---GCGCCUG-CG-UGgC-GGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 43632 | 0.67 | 0.444564 |
Target: 5'- cCAGGGCcgacaGCGGuCGCcgucGCUGCCGc -3' miRNA: 3'- aGUCCCGaag--CGCCuGCG----UGGCGGCu -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 67870 | 0.66 | 0.492033 |
Target: 5'- aCAuGGGa-UCGCGG-CGCGCCGgCGu -3' miRNA: 3'- aGU-CCCgaAGCGCCuGCGUGGCgGCu -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 18130 | 0.66 | 0.521611 |
Target: 5'- uUCAGGGC-----GGugGCACCGaCCGc -3' miRNA: 3'- -AGUCCCGaagcgCCugCGUGGC-GGCu -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 30978 | 0.67 | 0.444564 |
Target: 5'- aCAGGGCa--GCGGuuGUAUgCGCCGGg -3' miRNA: 3'- aGUCCCGaagCGCCugCGUG-GCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 45753 | 0.66 | 0.511671 |
Target: 5'- cCGGGGCggCGCGuGuuCGCugCGCgGu -3' miRNA: 3'- aGUCCCGaaGCGC-Cu-GCGugGCGgCu -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 7160 | 0.66 | 0.492033 |
Target: 5'- gCGGGGUggccaUCGCGGugucCGaGCCGUCGGg -3' miRNA: 3'- aGUCCCGa----AGCGCCu---GCgUGGCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 12808 | 0.67 | 0.417344 |
Target: 5'- -gAGcGGCUg-GCGGGcCGUGCCGUCGAc -3' miRNA: 3'- agUC-CCGAagCGCCU-GCGUGGCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 18003 | 0.68 | 0.382681 |
Target: 5'- cCAGGuGCUgaccucCGCGGGCaccgacgagGCGCUGCCGc -3' miRNA: 3'- aGUCC-CGAa-----GCGCCUG---------CGUGGCGGCu -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 8648 | 0.66 | 0.508704 |
Target: 5'- -uGGGGCUaUCGCGGcgacacugagugcgGCacgacgauguGCAUCGCCGGc -3' miRNA: 3'- agUCCCGA-AGCGCC--------------UG----------CGUGGCGGCU- -5' |
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19267 | 3' | -60.8 | NC_004685.1 | + | 37598 | 0.66 | 0.50181 |
Target: 5'- uUCGGGGUgccCGgGGGaaccUGC-CCGCCGGu -3' miRNA: 3'- -AGUCCCGaa-GCgCCU----GCGuGGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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