miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19267 3' -60.8 NC_004685.1 + 121 0.74 0.159888
Target:  5'- gUAGcGGCgaccggCGCGGGCGCGgCUGCCGGg -3'
miRNA:   3'- aGUC-CCGaa----GCGCCUGCGU-GGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 2863 0.68 0.408499
Target:  5'- gCAGGGCgugacCGCGGGCuGCuACgGcCCGAc -3'
miRNA:   3'- aGUCCCGaa---GCGCCUG-CG-UGgC-GGCU- -5'
19267 3' -60.8 NC_004685.1 + 7160 0.66 0.492033
Target:  5'- gCGGGGUggccaUCGCGGugucCGaGCCGUCGGg -3'
miRNA:   3'- aGUCCCGa----AGCGCCu---GCgUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 8648 0.66 0.508704
Target:  5'- -uGGGGCUaUCGCGGcgacacugagugcgGCacgacgauguGCAUCGCCGGc -3'
miRNA:   3'- agUCCCGA-AGCGCC--------------UG----------CGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 9227 0.66 0.521611
Target:  5'- -aGGaGGCcagCGCGGauugggccaGCGCcgggGCCGCCGAa -3'
miRNA:   3'- agUC-CCGaa-GCGCC---------UGCG----UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 11409 0.72 0.228083
Target:  5'- --cGGGUUUCgGCGGugGcCGCCGCUGu -3'
miRNA:   3'- aguCCCGAAG-CGCCugC-GUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 11609 0.69 0.3344
Target:  5'- -gAGGGCggCGUGGA-GCGCaGCCGGu -3'
miRNA:   3'- agUCCCGaaGCGCCUgCGUGgCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 11837 0.67 0.444564
Target:  5'- ---uGGCcgagUUgGUGGGCGCgACCGCCGAc -3'
miRNA:   3'- agucCCG----AAgCGCCUGCG-UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 12002 0.68 0.382681
Target:  5'- -uGGGGCagaugcucUCGcCGGACGCcaaCGCCGAc -3'
miRNA:   3'- agUCCCGa-------AGC-GCCUGCGug-GCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 12475 0.7 0.296986
Target:  5'- -aGGGGCcgacCGUGGACGCggccgguGCCGCCa- -3'
miRNA:   3'- agUCCCGaa--GCGCCUGCG-------UGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 12583 0.69 0.3344
Target:  5'- -aAGGGCcaaacCGUGuccgaACGCGCCGCCGAg -3'
miRNA:   3'- agUCCCGaa---GCGCc----UGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 12808 0.67 0.417344
Target:  5'- -gAGcGGCUg-GCGGGcCGUGCCGUCGAc -3'
miRNA:   3'- agUC-CCGAagCGCCU-GCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 13139 0.67 0.463253
Target:  5'- --cGGGCgaCGCGGA-GgGCCGCCu- -3'
miRNA:   3'- aguCCCGaaGCGCCUgCgUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 13758 0.67 0.453856
Target:  5'- --cGGGCUgcuGCuGGCGUACCGCCc- -3'
miRNA:   3'- aguCCCGAag-CGcCUGCGUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 16271 0.72 0.20849
Target:  5'- -aAGGGCUUCGaagaGGGCgGCgacaucgugauccucACCGCCGAc -3'
miRNA:   3'- agUCCCGAAGCg---CCUG-CG---------------UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 18003 0.68 0.382681
Target:  5'- cCAGGuGCUgaccucCGCGGGCaccgacgagGCGCUGCCGc -3'
miRNA:   3'- aGUCC-CGAa-----GCGCCUG---------CGUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 18056 0.66 0.47275
Target:  5'- gCAGGGCUUcacCGUGGGC-CACCugggcuucggGCCGc -3'
miRNA:   3'- aGUCCCGAA---GCGCCUGcGUGG----------CGGCu -5'
19267 3' -60.8 NC_004685.1 + 18130 0.66 0.521611
Target:  5'- uUCAGGGC-----GGugGCACCGaCCGc -3'
miRNA:   3'- -AGUCCCGaagcgCCugCGUGGC-GGCu -5'
19267 3' -60.8 NC_004685.1 + 18176 0.66 0.492033
Target:  5'- cUCAGGGUgUCGUGuACGUGgaGCCGGg -3'
miRNA:   3'- -AGUCCCGaAGCGCcUGCGUggCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 18768 0.66 0.47275
Target:  5'- --cGGGUggcCGUGGcGCGCaucugACCGCCGAg -3'
miRNA:   3'- aguCCCGaa-GCGCC-UGCG-----UGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.