miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19267 3' -60.8 NC_004685.1 + 68356 1.08 0.000471
Target:  5'- aUCAGGGCUUCGCGGACGCACCGCCGAc -3'
miRNA:   3'- -AGUCCCGAAGCGCCUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 30702 0.81 0.04761
Target:  5'- cUCGGGGU--CGCGGuACGCGCCGCCGu -3'
miRNA:   3'- -AGUCCCGaaGCGCC-UGCGUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 32195 0.77 0.096774
Target:  5'- cCAGGGCUggGCGGGuucucccaguCGaCGCCGCCGAa -3'
miRNA:   3'- aGUCCCGAagCGCCU----------GC-GUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 121 0.74 0.159888
Target:  5'- gUAGcGGCgaccggCGCGGGCGCGgCUGCCGGg -3'
miRNA:   3'- aGUC-CCGaa----GCGCCUGCGU-GGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 54430 0.74 0.159888
Target:  5'- gCAGGuGCUcUGgGuuGACGCACCGCCGAu -3'
miRNA:   3'- aGUCC-CGAaGCgC--CUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 27245 0.74 0.172752
Target:  5'- -aAGGGCUgUCGUGGGCGguCaGCCGAg -3'
miRNA:   3'- agUCCCGA-AGCGCCUGCguGgCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 58348 0.73 0.186532
Target:  5'- gUCGGGGCgggUCGcCGGucGCGCACgGCCc- -3'
miRNA:   3'- -AGUCCCGa--AGC-GCC--UGCGUGgCGGcu -5'
19267 3' -60.8 NC_004685.1 + 16271 0.72 0.20849
Target:  5'- -aAGGGCUUCGaagaGGGCgGCgacaucgugauccucACCGCCGAc -3'
miRNA:   3'- agUCCCGAAGCg---CCUG-CG---------------UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 20466 0.72 0.216471
Target:  5'- uUCGGccgcguuGGCcaCGCGGACGCcagcagucaucACCGCCGAa -3'
miRNA:   3'- -AGUC-------CCGaaGCGCCUGCG-----------UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 62909 0.72 0.228083
Target:  5'- cCAGGGCgucaCGCaGACGCACCGgCu- -3'
miRNA:   3'- aGUCCCGaa--GCGcCUGCGUGGCgGcu -5'
19267 3' -60.8 NC_004685.1 + 11409 0.72 0.228083
Target:  5'- --cGGGUUUCgGCGGugGcCGCCGCUGu -3'
miRNA:   3'- aguCCCGAAG-CGCCugC-GUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 51152 0.7 0.283902
Target:  5'- --cGGGCUcgacuucgcggUUGCGGACGCGCa-CCGAa -3'
miRNA:   3'- aguCCCGA-----------AGCGCCUGCGUGgcGGCU- -5'
19267 3' -60.8 NC_004685.1 + 12475 0.7 0.296986
Target:  5'- -aGGGGCcgacCGUGGACGCggccgguGCCGCCa- -3'
miRNA:   3'- agUCCCGaa--GCGCCUGCG-------UGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 23893 0.7 0.304772
Target:  5'- cCAGGGCca-GCuuGCGCACCGCCu- -3'
miRNA:   3'- aGUCCCGaagCGccUGCGUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 50333 0.7 0.311986
Target:  5'- cCGGGGCcgacUUCGcCGcGGCGCAUCuuGCCGAu -3'
miRNA:   3'- aGUCCCG----AAGC-GC-CUGCGUGG--CGGCU- -5'
19267 3' -60.8 NC_004685.1 + 12583 0.69 0.3344
Target:  5'- -aAGGGCcaaacCGUGuccgaACGCGCCGCCGAg -3'
miRNA:   3'- agUCCCGaa---GCGCc----UGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 11609 0.69 0.3344
Target:  5'- -gAGGGCggCGUGGA-GCGCaGCCGGu -3'
miRNA:   3'- agUCCCGaaGCGCCUgCGUGgCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 48902 0.69 0.342129
Target:  5'- gCGGGGCU--GCc-GCGCAUCGCCGAg -3'
miRNA:   3'- aGUCCCGAagCGccUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 30339 0.69 0.35797
Target:  5'- -gAGGGUggUC-UGGucCGCGCCGCCGAc -3'
miRNA:   3'- agUCCCGa-AGcGCCu-GCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 30120 0.69 0.35797
Target:  5'- -gGGGGCagugUCGCGGcCGCACUcgGCCc- -3'
miRNA:   3'- agUCCCGa---AGCGCCuGCGUGG--CGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.