Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19268 | 5' | -58.9 | NC_004685.1 | + | 53431 | 0.69 | 0.438681 |
Target: 5'- aAGCCcuuGGCGAUGucGGCGGUCGGcACu -3' miRNA: 3'- -UCGGcu-CCGCUGCu-CCGCUAGCUcUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 21301 | 0.69 | 0.429447 |
Target: 5'- cAGCUGuGGUGGCGcGGCGAggCGAuGCg -3' miRNA: 3'- -UCGGCuCCGCUGCuCCGCUa-GCUcUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 1741 | 0.69 | 0.429447 |
Target: 5'- uGCCGcGGCGuccGCG-GGCGAUgGcAGACg -3' miRNA: 3'- uCGGCuCCGC---UGCuCCGCUAgC-UCUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 391 | 0.69 | 0.423963 |
Target: 5'- cAGCCGccucgagcugcucguAGGCGGC--GGCGAgcUCGGGGCu -3' miRNA: 3'- -UCGGC---------------UCCGCUGcuCCGCU--AGCUCUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 64564 | 0.69 | 0.420329 |
Target: 5'- uGCCGAGcGCGGucuCGAuGGCGAgUCGAG-Ca -3' miRNA: 3'- uCGGCUC-CGCU---GCU-CCGCU-AGCUCuG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 15062 | 0.69 | 0.411329 |
Target: 5'- -aCCGcGGUGACGAGGUGGcCGGGGa -3' miRNA: 3'- ucGGCuCCGCUGCUCCGCUaGCUCUg -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 41527 | 0.69 | 0.408653 |
Target: 5'- gGGCCGAGGCGuuCGucGCGAcugaacgcaucgcgUCGAcGGCu -3' miRNA: 3'- -UCGGCUCCGCu-GCucCGCU--------------AGCU-CUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 27010 | 0.69 | 0.402449 |
Target: 5'- aGGCUGAGGCGcaagcCGAGGUucgCGAGAg -3' miRNA: 3'- -UCGGCUCCGCu----GCUCCGcuaGCUCUg -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 16535 | 0.69 | 0.402449 |
Target: 5'- cGGCCGaAGGCGAcCGcGGUGAUgGcGGCg -3' miRNA: 3'- -UCGGC-UCCGCU-GCuCCGCUAgCuCUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 15158 | 0.69 | 0.393693 |
Target: 5'- uGCUG-GGCuuGACGcugGGuGCGAUCGAGGCg -3' miRNA: 3'- uCGGCuCCG--CUGC---UC-CGCUAGCUCUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 11075 | 0.69 | 0.392824 |
Target: 5'- uGGCCGcGGCGAcacugcgcagcaaCGGGcGCGAcgcCGAGACg -3' miRNA: 3'- -UCGGCuCCGCU-------------GCUC-CGCUa--GCUCUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 14260 | 0.7 | 0.388498 |
Target: 5'- aAGCCGAGacCGGCGAGGCcaccgacaucgugugGAUCGAaugcGGCg -3' miRNA: 3'- -UCGGCUCc-GCUGCUCCG---------------CUAGCU----CUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 41830 | 0.7 | 0.384204 |
Target: 5'- gGGCCGAgGGCGacccuccGCGcGGacuGGUCGAGGCg -3' miRNA: 3'- -UCGGCU-CCGC-------UGCuCCg--CUAGCUCUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 30392 | 0.7 | 0.376554 |
Target: 5'- uGCCGGGGCcGCGAccaacgGGCGGgccgaacacggCGAGGCg -3' miRNA: 3'- uCGGCUCCGcUGCU------CCGCUa----------GCUCUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 21878 | 0.7 | 0.368175 |
Target: 5'- aAGcCCGAGGCuGAgccCGAGGCuGAgccCGAGGCu -3' miRNA: 3'- -UC-GGCUCCG-CU---GCUCCG-CUa--GCUCUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 3225 | 0.7 | 0.359925 |
Target: 5'- uGCCGGGGCGGgGucGgGGUCGGGcCg -3' miRNA: 3'- uCGGCUCCGCUgCucCgCUAGCUCuG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 18285 | 0.7 | 0.359925 |
Target: 5'- gGGCgGGGuacaGCGGCGAGGUGAUUGucaguGGCg -3' miRNA: 3'- -UCGgCUC----CGCUGCUCCGCUAGCu----CUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 46691 | 0.7 | 0.346996 |
Target: 5'- gGGCCuaucGGCGGCGAuGccacgagacgacaacGCGGUCGAGACg -3' miRNA: 3'- -UCGGcu--CCGCUGCU-C---------------CGCUAGCUCUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 31002 | 0.71 | 0.335958 |
Target: 5'- aGGCCGAacgcGGCGAguuCGAGGCGuUCGAcaagcagaccaaGACg -3' miRNA: 3'- -UCGGCU----CCGCU---GCUCCGCuAGCU------------CUG- -5' |
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19268 | 5' | -58.9 | NC_004685.1 | + | 19696 | 0.71 | 0.335958 |
Target: 5'- cGGCCGuGGCGGgcCGAGGCGuUCGGccacaucucguGGCg -3' miRNA: 3'- -UCGGCuCCGCU--GCUCCGCuAGCU-----------CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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