miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19268 5' -58.9 NC_004685.1 + 59774 0.67 0.536584
Target:  5'- cGCCGuuGGCGAUGucccAGGUGugCGGGACg -3'
miRNA:   3'- uCGGCu-CCGCUGC----UCCGCuaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 35499 0.67 0.536584
Target:  5'- uGCUGAGGCGACGgugccacggAGGUcaGGUCGAc-- -3'
miRNA:   3'- uCGGCUCCGCUGC---------UCCG--CUAGCUcug -5'
19268 5' -58.9 NC_004685.1 + 11605 0.67 0.536584
Target:  5'- cGCCGAgGGCGGCGuGGaGCGcagccggUGGGACa -3'
miRNA:   3'- uCGGCU-CCGCUGC-UC-CGCua-----GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 17788 0.67 0.536584
Target:  5'- uGCCGcucAGGCcACGGuGCuGGUCGAGGCg -3'
miRNA:   3'- uCGGC---UCCGcUGCUcCG-CUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 16764 0.67 0.516296
Target:  5'- uGuCCGAGGCGaucacugccaagGCGcaGGGCGA-CGAGAUu -3'
miRNA:   3'- uC-GGCUCCGC------------UGC--UCCGCUaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 54091 0.67 0.509268
Target:  5'- cGCCGGGGUuguagucGACGGGGCcguugucguucggcaGAUCaGGGAUg -3'
miRNA:   3'- uCGGCUCCG-------CUGCUCCG---------------CUAG-CUCUG- -5'
19268 5' -58.9 NC_004685.1 + 18196 0.67 0.506268
Target:  5'- gAGCCGggcaagguGGGCGACGcGGacugGAUCGAG-Cu -3'
miRNA:   3'- -UCGGC--------UCCGCUGCuCCg---CUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 36599 0.67 0.506268
Target:  5'- cGCCGAGGaccuGGCGGGuGCGcUCGccgcGGGCa -3'
miRNA:   3'- uCGGCUCCg---CUGCUC-CGCuAGC----UCUG- -5'
19268 5' -58.9 NC_004685.1 + 26338 0.67 0.506268
Target:  5'- uGCUca-GCGACGAGGCGAUggcCGAGuACg -3'
miRNA:   3'- uCGGcucCGCUGCUCCGCUA---GCUC-UG- -5'
19268 5' -58.9 NC_004685.1 + 2827 0.67 0.506268
Target:  5'- cGUCGAGG-GugGGGGCG-UUGGGcACg -3'
miRNA:   3'- uCGGCUCCgCugCUCCGCuAGCUC-UG- -5'
19268 5' -58.9 NC_004685.1 + 48725 0.68 0.496323
Target:  5'- aAGCCGAacacccggccGGUGAUGAGGUugggcuccuGGUCGuGGCc -3'
miRNA:   3'- -UCGGCU----------CCGCUGCUCCG---------CUAGCuCUG- -5'
19268 5' -58.9 NC_004685.1 + 21938 0.68 0.496323
Target:  5'- gAGCCuGAGGCGACcccucGGCuc-CGAGGCg -3'
miRNA:   3'- -UCGG-CUCCGCUGcu---CCGcuaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 25637 0.68 0.486468
Target:  5'- uGGCCGcGcCGACGucGCGcAUCGAGAUg -3'
miRNA:   3'- -UCGGCuCcGCUGCucCGC-UAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 25844 0.68 0.472829
Target:  5'- cGCUGGGcGCGAUGugaaucuGGGCGAgcggcccgcgcaggUCGGGGCg -3'
miRNA:   3'- uCGGCUC-CGCUGC-------UCCGCU--------------AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 32267 0.68 0.467043
Target:  5'- cGGCCGccGGUGGCGcGGGCGGUCcugguGGCg -3'
miRNA:   3'- -UCGGCu-CCGCUGC-UCCGCUAGcu---CUG- -5'
19268 5' -58.9 NC_004685.1 + 19924 0.68 0.457482
Target:  5'- cAGCCGAacCGACuauGGCGA-CGAGACg -3'
miRNA:   3'- -UCGGCUccGCUGcu-CCGCUaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 57987 0.68 0.457482
Target:  5'- cAGCCG-GGUGAUGAGGUag-CGGGcACg -3'
miRNA:   3'- -UCGGCuCCGCUGCUCCGcuaGCUC-UG- -5'
19268 5' -58.9 NC_004685.1 + 65049 0.68 0.457482
Target:  5'- cGCCGuAGGCGACcaucucGCGGUCGGGcCa -3'
miRNA:   3'- uCGGC-UCCGCUGcuc---CGCUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 29299 0.68 0.457482
Target:  5'- aGGCCGAGcGUuGCGcAGGCGuccUCGAGGa -3'
miRNA:   3'- -UCGGCUC-CGcUGC-UCCGCu--AGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 18908 0.68 0.448027
Target:  5'- uGGCCGAcgcgcgccGCGACGGcGCGggCGAGAUg -3'
miRNA:   3'- -UCGGCUc-------CGCUGCUcCGCuaGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.