miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19268 5' -58.9 NC_004685.1 + 14623 0.67 0.557142
Target:  5'- uGCUGAuGGCGAUGGaaaccaccgcGGCGAccgcugUCGAGAa -3'
miRNA:   3'- uCGGCU-CCGCUGCU----------CCGCU------AGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 14632 0.76 0.150937
Target:  5'- cGCCGAGG--GCGAGGUGAUCGAcgaGACc -3'
miRNA:   3'- uCGGCUCCgcUGCUCCGCUAGCU---CUG- -5'
19268 5' -58.9 NC_004685.1 + 14673 0.66 0.609375
Target:  5'- cGaCCGAGgGUGAcccCGAGGCGGUgccCGAGGa -3'
miRNA:   3'- uC-GGCUC-CGCU---GCUCCGCUA---GCUCUg -5'
19268 5' -58.9 NC_004685.1 + 15062 0.69 0.411329
Target:  5'- -aCCGcGGUGACGAGGUGGcCGGGGa -3'
miRNA:   3'- ucGGCuCCGCUGCUCCGCUaGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 15158 0.69 0.393693
Target:  5'- uGCUG-GGCuuGACGcugGGuGCGAUCGAGGCg -3'
miRNA:   3'- uCGGCuCCG--CUGC---UC-CGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 16535 0.69 0.402449
Target:  5'- cGGCCGaAGGCGAcCGcGGUGAUgGcGGCg -3'
miRNA:   3'- -UCGGC-UCCGCU-GCuCCGCUAgCuCUG- -5'
19268 5' -58.9 NC_004685.1 + 16562 0.66 0.609375
Target:  5'- gAGCCGA-GCGACGAcGGCGG-CGuG-Cu -3'
miRNA:   3'- -UCGGCUcCGCUGCU-CCGCUaGCuCuG- -5'
19268 5' -58.9 NC_004685.1 + 16764 0.67 0.516296
Target:  5'- uGuCCGAGGCGaucacugccaagGCGcaGGGCGA-CGAGAUu -3'
miRNA:   3'- uC-GGCUCCGC------------UGC--UCCGCUaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 17788 0.67 0.536584
Target:  5'- uGCCGcucAGGCcACGGuGCuGGUCGAGGCg -3'
miRNA:   3'- uCGGC---UCCGcUGCUcCG-CUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 18196 0.67 0.506268
Target:  5'- gAGCCGggcaagguGGGCGACGcGGacugGAUCGAG-Cu -3'
miRNA:   3'- -UCGGC--------UCCGCUGCuCCg---CUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 18285 0.7 0.359925
Target:  5'- gGGCgGGGuacaGCGGCGAGGUGAUUGucaguGGCg -3'
miRNA:   3'- -UCGgCUC----CGCUGCUCCGCUAGCu----CUG- -5'
19268 5' -58.9 NC_004685.1 + 18356 0.74 0.204521
Target:  5'- cGGCCGGuGGCGAUGAGGUGA-CGAucagcgucgccccuGACg -3'
miRNA:   3'- -UCGGCU-CCGCUGCUCCGCUaGCU--------------CUG- -5'
19268 5' -58.9 NC_004685.1 + 18908 0.68 0.448027
Target:  5'- uGGCCGAcgcgcgccGCGACGGcGCGggCGAGAUg -3'
miRNA:   3'- -UCGGCUc-------CGCUGCUcCGCuaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 19449 0.73 0.228039
Target:  5'- cGCCGugcguGGCG-CGucGGCGGUCGGGAUg -3'
miRNA:   3'- uCGGCu----CCGCuGCu-CCGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 19696 0.71 0.335958
Target:  5'- cGGCCGuGGCGGgcCGAGGCGuUCGGccacaucucguGGCg -3'
miRNA:   3'- -UCGGCuCCGCU--GCUCCGCuAGCU-----------CUG- -5'
19268 5' -58.9 NC_004685.1 + 19924 0.68 0.457482
Target:  5'- cAGCCGAacCGACuauGGCGA-CGAGACg -3'
miRNA:   3'- -UCGGCUccGCUGcu-CCGCUaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 21301 0.69 0.429447
Target:  5'- cAGCUGuGGUGGCGcGGCGAggCGAuGCg -3'
miRNA:   3'- -UCGGCuCCGCUGCuCCGCUa-GCUcUG- -5'
19268 5' -58.9 NC_004685.1 + 21463 0.66 0.619907
Target:  5'- cGGCCGGuguuCGACacGGGCG-UCGAGACa -3'
miRNA:   3'- -UCGGCUcc--GCUGc-UCCGCuAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 21878 0.7 0.368175
Target:  5'- aAGcCCGAGGCuGAgccCGAGGCuGAgccCGAGGCu -3'
miRNA:   3'- -UC-GGCUCCG-CU---GCUCCG-CUa--GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 21938 0.68 0.496323
Target:  5'- gAGCCuGAGGCGACcccucGGCuc-CGAGGCg -3'
miRNA:   3'- -UCGG-CUCCGCUGcu---CCGcuaGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.