miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19268 5' -58.9 NC_004685.1 + 391 0.69 0.423963
Target:  5'- cAGCCGccucgagcugcucguAGGCGGC--GGCGAgcUCGGGGCu -3'
miRNA:   3'- -UCGGC---------------UCCGCUGcuCCGCU--AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 1741 0.69 0.429447
Target:  5'- uGCCGcGGCGuccGCG-GGCGAUgGcAGACg -3'
miRNA:   3'- uCGGCuCCGC---UGCuCCGCUAgC-UCUG- -5'
19268 5' -58.9 NC_004685.1 + 2827 0.67 0.506268
Target:  5'- cGUCGAGG-GugGGGGCG-UUGGGcACg -3'
miRNA:   3'- uCGGCUCCgCugCUCCGCuAGCUC-UG- -5'
19268 5' -58.9 NC_004685.1 + 3225 0.7 0.359925
Target:  5'- uGCCGGGGCGGgGucGgGGUCGGGcCg -3'
miRNA:   3'- uCGGCUCCGCUgCucCgCUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 4444 0.66 0.609375
Target:  5'- aGGCCGcguucGGGCGccccgGCGAGuGCGucgaUGAGACg -3'
miRNA:   3'- -UCGGC-----UCCGC-----UGCUC-CGCua--GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 6004 0.71 0.303675
Target:  5'- cAGCuuCGAGGCGuccucgaugccgcgGCGGGGUGAuguguuguggcaUCGAGACg -3'
miRNA:   3'- -UCG--GCUCCGC--------------UGCUCCGCU------------AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 6683 0.66 0.619907
Target:  5'- aGGCCGGGGCcaagGAgccCGAGGUGggCGGcacccuGACg -3'
miRNA:   3'- -UCGGCUCCG----CU---GCUCCGCuaGCU------CUG- -5'
19268 5' -58.9 NC_004685.1 + 8174 0.67 0.546833
Target:  5'- uGCCGccGCGcACGAGGCcGGguUCGAGGa -3'
miRNA:   3'- uCGGCucCGC-UGCUCCG-CU--AGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 8402 0.71 0.305848
Target:  5'- uGUCGuGG-GACGAGGCGuUUGAGAUg -3'
miRNA:   3'- uCGGCuCCgCUGCUCCGCuAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 9804 0.76 0.147003
Target:  5'- cGGCCGccGCGGCGAGGUGGUCccGGCg -3'
miRNA:   3'- -UCGGCucCGCUGCUCCGCUAGcuCUG- -5'
19268 5' -58.9 NC_004685.1 + 10050 0.67 0.557142
Target:  5'- gGGCCGugcguGGUgcccGAgGAGGCGGUcgcCGAGAUu -3'
miRNA:   3'- -UCGGCu----CCG----CUgCUCCGCUA---GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 10104 0.66 0.567507
Target:  5'- cAGUCGAugagcGGCGACGAGaacGCGcUCGAcgGGCa -3'
miRNA:   3'- -UCGGCU-----CCGCUGCUC---CGCuAGCU--CUG- -5'
19268 5' -58.9 NC_004685.1 + 11075 0.69 0.392824
Target:  5'- uGGCCGcGGCGAcacugcgcagcaaCGGGcGCGAcgcCGAGACg -3'
miRNA:   3'- -UCGGCuCCGCU-------------GCUC-CGCUa--GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 11605 0.67 0.536584
Target:  5'- cGCCGAgGGCGGCGuGGaGCGcagccggUGGGACa -3'
miRNA:   3'- uCGGCU-CCGCUGC-UC-CGCua-----GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 11788 0.66 0.609375
Target:  5'- cGCCGAGGCG-CGGcGCauGGUCGaAGAg -3'
miRNA:   3'- uCGGCUCCGCuGCUcCG--CUAGC-UCUg -5'
19268 5' -58.9 NC_004685.1 + 11859 0.73 0.245772
Target:  5'- cGCCGAccugcuCGGCGAGGCGAuugucgagcucaUCGAGACc -3'
miRNA:   3'- uCGGCUcc----GCUGCUCCGCU------------AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 12354 0.66 0.588374
Target:  5'- cAGCCGAcGCGGCaGAGG-GAaCGGGAa -3'
miRNA:   3'- -UCGGCUcCGCUG-CUCCgCUaGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 14009 0.78 0.106605
Target:  5'- cGGUUccGGCGACGAGGCGGUCGAGu- -3'
miRNA:   3'- -UCGGcuCCGCUGCUCCGCUAGCUCug -5'
19268 5' -58.9 NC_004685.1 + 14260 0.7 0.388498
Target:  5'- aAGCCGAGacCGGCGAGGCcaccgacaucgugugGAUCGAaugcGGCg -3'
miRNA:   3'- -UCGGCUCc-GCUGCUCCG---------------CUAGCU----CUG- -5'
19268 5' -58.9 NC_004685.1 + 14428 0.81 0.066907
Target:  5'- cGCCGAGGC--CGAGGCGAagGAGGCg -3'
miRNA:   3'- uCGGCUCCGcuGCUCCGCUagCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.