miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19268 5' -58.9 NC_004685.1 + 68290 1.08 0.000747
Target:  5'- cAGCCGAGGCGACGAGGCGAUCGAGACc -3'
miRNA:   3'- -UCGGCUCCGCUGCUCCGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 67447 0.66 0.57792
Target:  5'- cGGCCG-GGCGGC-AGGCaGGUCu-GGCa -3'
miRNA:   3'- -UCGGCuCCGCUGcUCCG-CUAGcuCUG- -5'
19268 5' -58.9 NC_004685.1 + 65049 0.68 0.457482
Target:  5'- cGCCGuAGGCGACcaucucGCGGUCGGGcCa -3'
miRNA:   3'- uCGGC-UCCGCUGcuc---CGCUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 64564 0.69 0.420329
Target:  5'- uGCCGAGcGCGGucuCGAuGGCGAgUCGAG-Ca -3'
miRNA:   3'- uCGGCUC-CGCU---GCU-CCGCU-AGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 64255 0.73 0.245772
Target:  5'- uGuuGAGGCGugGAGGUG-UCGaAGAa -3'
miRNA:   3'- uCggCUCCGCugCUCCGCuAGC-UCUg -5'
19268 5' -58.9 NC_004685.1 + 62950 0.66 0.619907
Target:  5'- cGGCCGAucCGGCGGGGUGA-CGuGAg -3'
miRNA:   3'- -UCGGCUccGCUGCUCCGCUaGCuCUg -5'
19268 5' -58.9 NC_004685.1 + 59774 0.67 0.536584
Target:  5'- cGCCGuuGGCGAUGucccAGGUGugCGGGACg -3'
miRNA:   3'- uCGGCu-CCGCUGC----UCCGCuaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 57987 0.68 0.457482
Target:  5'- cAGCCG-GGUGAUGAGGUag-CGGGcACg -3'
miRNA:   3'- -UCGGCuCCGCUGCUCCGcuaGCUC-UG- -5'
19268 5' -58.9 NC_004685.1 + 54091 0.67 0.509268
Target:  5'- cGCCGGGGUuguagucGACGGGGCcguugucguucggcaGAUCaGGGAUg -3'
miRNA:   3'- uCGGCUCCG-------CUGCUCCG---------------CUAG-CUCUG- -5'
19268 5' -58.9 NC_004685.1 + 53510 0.66 0.609375
Target:  5'- uGCCGuccuCGugGGGGUGGuacaUCGAGGCu -3'
miRNA:   3'- uCGGCucc-GCugCUCCGCU----AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 53431 0.69 0.438681
Target:  5'- aAGCCcuuGGCGAUGucGGCGGUCGGcACu -3'
miRNA:   3'- -UCGGcu-CCGCUGCu-CCGCUAGCUcUG- -5'
19268 5' -58.9 NC_004685.1 + 53113 0.74 0.206091
Target:  5'- uGCUGAGGCGACGGcagcgcccaGCGGUCGAG-Cg -3'
miRNA:   3'- uCGGCUCCGCUGCUc--------CGCUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 48725 0.68 0.496323
Target:  5'- aAGCCGAacacccggccGGUGAUGAGGUugggcuccuGGUCGuGGCc -3'
miRNA:   3'- -UCGGCU----------CCGCUGCUCCG---------CUAGCuCUG- -5'
19268 5' -58.9 NC_004685.1 + 46691 0.7 0.346996
Target:  5'- gGGCCuaucGGCGGCGAuGccacgagacgacaacGCGGUCGAGACg -3'
miRNA:   3'- -UCGGcu--CCGCUGCU-C---------------CGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 43139 0.66 0.575834
Target:  5'- cAGCgCGAuccuGGCGACGcgcaccgagugcGGCGG-CGAGACg -3'
miRNA:   3'- -UCG-GCU----CCGCUGCu-----------CCGCUaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 42025 0.67 0.546833
Target:  5'- cGCUGAcGGCaACGAGGUGGcgcgCGAGGa -3'
miRNA:   3'- uCGGCU-CCGcUGCUCCGCUa---GCUCUg -5'
19268 5' -58.9 NC_004685.1 + 41830 0.7 0.384204
Target:  5'- gGGCCGAgGGCGacccuccGCGcGGacuGGUCGAGGCg -3'
miRNA:   3'- -UCGGCU-CCGC-------UGCuCCg--CUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 41527 0.69 0.408653
Target:  5'- gGGCCGAGGCGuuCGucGCGAcugaacgcaucgcgUCGAcGGCu -3'
miRNA:   3'- -UCGGCUCCGCu-GCucCGCU--------------AGCU-CUG- -5'
19268 5' -58.9 NC_004685.1 + 38332 0.66 0.609375
Target:  5'- uGGCCGAucuGCG-CGAGcUGGUCGAGAa -3'
miRNA:   3'- -UCGGCUc--CGCuGCUCcGCUAGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 36599 0.67 0.506268
Target:  5'- cGCCGAGGaccuGGCGGGuGCGcUCGccgcGGGCa -3'
miRNA:   3'- uCGGCUCCg---CUGCUC-CGCuAGC----UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.