miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19268 5' -58.9 NC_004685.1 + 68290 1.08 0.000747
Target:  5'- cAGCCGAGGCGACGAGGCGAUCGAGACc -3'
miRNA:   3'- -UCGGCUCCGCUGCUCCGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 14428 0.81 0.066907
Target:  5'- cGCCGAGGC--CGAGGCGAagGAGGCg -3'
miRNA:   3'- uCGGCUCCGcuGCUCCGCUagCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 14009 0.78 0.106605
Target:  5'- cGGUUccGGCGACGAGGCGGUCGAGu- -3'
miRNA:   3'- -UCGGcuCCGCUGCUCCGCUAGCUCug -5'
19268 5' -58.9 NC_004685.1 + 9804 0.76 0.147003
Target:  5'- cGGCCGccGCGGCGAGGUGGUCccGGCg -3'
miRNA:   3'- -UCGGCucCGCUGCUCCGCUAGcuCUG- -5'
19268 5' -58.9 NC_004685.1 + 14632 0.76 0.150937
Target:  5'- cGCCGAGG--GCGAGGUGAUCGAcgaGACc -3'
miRNA:   3'- uCGGCUCCgcUGCUCCGCUAGCU---CUG- -5'
19268 5' -58.9 NC_004685.1 + 18356 0.74 0.204521
Target:  5'- cGGCCGGuGGCGAUGAGGUGA-CGAucagcgucgccccuGACg -3'
miRNA:   3'- -UCGGCU-CCGCUGCUCCGCUaGCU--------------CUG- -5'
19268 5' -58.9 NC_004685.1 + 53113 0.74 0.206091
Target:  5'- uGCUGAGGCGACGGcagcgcccaGCGGUCGAG-Cg -3'
miRNA:   3'- uCGGCUCCGCUGCUc--------CGCUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 19449 0.73 0.228039
Target:  5'- cGCCGugcguGGCG-CGucGGCGGUCGGGAUg -3'
miRNA:   3'- uCGGCu----CCGCuGCu-CCGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 64255 0.73 0.245772
Target:  5'- uGuuGAGGCGugGAGGUG-UCGaAGAa -3'
miRNA:   3'- uCggCUCCGCugCUCCGCuAGC-UCUg -5'
19268 5' -58.9 NC_004685.1 + 11859 0.73 0.245772
Target:  5'- cGCCGAccugcuCGGCGAGGCGAuugucgagcucaUCGAGACc -3'
miRNA:   3'- uCGGCUcc----GCUGCUCCGCU------------AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 6004 0.71 0.303675
Target:  5'- cAGCuuCGAGGCGuccucgaugccgcgGCGGGGUGAuguguuguggcaUCGAGACg -3'
miRNA:   3'- -UCG--GCUCCGC--------------UGCUCCGCU------------AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 8402 0.71 0.305848
Target:  5'- uGUCGuGG-GACGAGGCGuUUGAGAUg -3'
miRNA:   3'- uCGGCuCCgCUGCUCCGCuAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 19696 0.71 0.335958
Target:  5'- cGGCCGuGGCGGgcCGAGGCGuUCGGccacaucucguGGCg -3'
miRNA:   3'- -UCGGCuCCGCU--GCUCCGCuAGCU-----------CUG- -5'
19268 5' -58.9 NC_004685.1 + 31002 0.71 0.335958
Target:  5'- aGGCCGAacgcGGCGAguuCGAGGCGuUCGAcaagcagaccaaGACg -3'
miRNA:   3'- -UCGGCU----CCGCU---GCUCCGCuAGCU------------CUG- -5'
19268 5' -58.9 NC_004685.1 + 46691 0.7 0.346996
Target:  5'- gGGCCuaucGGCGGCGAuGccacgagacgacaacGCGGUCGAGACg -3'
miRNA:   3'- -UCGGcu--CCGCUGCU-C---------------CGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 18285 0.7 0.359925
Target:  5'- gGGCgGGGuacaGCGGCGAGGUGAUUGucaguGGCg -3'
miRNA:   3'- -UCGgCUC----CGCUGCUCCGCUAGCu----CUG- -5'
19268 5' -58.9 NC_004685.1 + 3225 0.7 0.359925
Target:  5'- uGCCGGGGCGGgGucGgGGUCGGGcCg -3'
miRNA:   3'- uCGGCUCCGCUgCucCgCUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 21878 0.7 0.368175
Target:  5'- aAGcCCGAGGCuGAgccCGAGGCuGAgccCGAGGCu -3'
miRNA:   3'- -UC-GGCUCCG-CU---GCUCCG-CUa--GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 30392 0.7 0.376554
Target:  5'- uGCCGGGGCcGCGAccaacgGGCGGgccgaacacggCGAGGCg -3'
miRNA:   3'- uCGGCUCCGcUGCU------CCGCUa----------GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 41830 0.7 0.384204
Target:  5'- gGGCCGAgGGCGacccuccGCGcGGacuGGUCGAGGCg -3'
miRNA:   3'- -UCGGCU-CCGC-------UGCuCCg--CUAGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.