miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19268 5' -58.9 NC_004685.1 + 32267 0.68 0.467043
Target:  5'- cGGCCGccGGUGGCGcGGGCGGUCcugguGGCg -3'
miRNA:   3'- -UCGGCu-CCGCUGC-UCCGCUAGcu---CUG- -5'
19268 5' -58.9 NC_004685.1 + 41527 0.69 0.408653
Target:  5'- gGGCCGAGGCGuuCGucGCGAcugaacgcaucgcgUCGAcGGCu -3'
miRNA:   3'- -UCGGCUCCGCu-GCucCGCU--------------AGCU-CUG- -5'
19268 5' -58.9 NC_004685.1 + 391 0.69 0.423963
Target:  5'- cAGCCGccucgagcugcucguAGGCGGC--GGCGAgcUCGGGGCu -3'
miRNA:   3'- -UCGGC---------------UCCGCUGcuCCGCU--AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 1741 0.69 0.429447
Target:  5'- uGCCGcGGCGuccGCG-GGCGAUgGcAGACg -3'
miRNA:   3'- uCGGCuCCGC---UGCuCCGCUAgC-UCUG- -5'
19268 5' -58.9 NC_004685.1 + 53431 0.69 0.438681
Target:  5'- aAGCCcuuGGCGAUGucGGCGGUCGGcACu -3'
miRNA:   3'- -UCGGcu-CCGCUGCu-CCGCUAGCUcUG- -5'
19268 5' -58.9 NC_004685.1 + 18908 0.68 0.448027
Target:  5'- uGGCCGAcgcgcgccGCGACGGcGCGggCGAGAUg -3'
miRNA:   3'- -UCGGCUc-------CGCUGCUcCGCuaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 19924 0.68 0.457482
Target:  5'- cAGCCGAacCGACuauGGCGA-CGAGACg -3'
miRNA:   3'- -UCGGCUccGCUGcu-CCGCUaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 57987 0.68 0.457482
Target:  5'- cAGCCG-GGUGAUGAGGUag-CGGGcACg -3'
miRNA:   3'- -UCGGCuCCGCUGCUCCGcuaGCUC-UG- -5'
19268 5' -58.9 NC_004685.1 + 65049 0.68 0.457482
Target:  5'- cGCCGuAGGCGACcaucucGCGGUCGGGcCa -3'
miRNA:   3'- uCGGC-UCCGCUGcuc---CGCUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 27010 0.69 0.402449
Target:  5'- aGGCUGAGGCGcaagcCGAGGUucgCGAGAg -3'
miRNA:   3'- -UCGGCUCCGCu----GCUCCGcuaGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 16535 0.69 0.402449
Target:  5'- cGGCCGaAGGCGAcCGcGGUGAUgGcGGCg -3'
miRNA:   3'- -UCGGC-UCCGCU-GCuCCGCUAgCuCUG- -5'
19268 5' -58.9 NC_004685.1 + 14260 0.7 0.388498
Target:  5'- aAGCCGAGacCGGCGAGGCcaccgacaucgugugGAUCGAaugcGGCg -3'
miRNA:   3'- -UCGGCUCc-GCUGCUCCG---------------CUAGCU----CUG- -5'
19268 5' -58.9 NC_004685.1 + 9804 0.76 0.147003
Target:  5'- cGGCCGccGCGGCGAGGUGGUCccGGCg -3'
miRNA:   3'- -UCGGCucCGCUGCUCCGCUAGcuCUG- -5'
19268 5' -58.9 NC_004685.1 + 19449 0.73 0.228039
Target:  5'- cGCCGugcguGGCG-CGucGGCGGUCGGGAUg -3'
miRNA:   3'- uCGGCu----CCGCuGCu-CCGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 11859 0.73 0.245772
Target:  5'- cGCCGAccugcuCGGCGAGGCGAuugucgagcucaUCGAGACc -3'
miRNA:   3'- uCGGCUcc----GCUGCUCCGCU------------AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 31002 0.71 0.335958
Target:  5'- aGGCCGAacgcGGCGAguuCGAGGCGuUCGAcaagcagaccaaGACg -3'
miRNA:   3'- -UCGGCU----CCGCU---GCUCCGCuAGCU------------CUG- -5'
19268 5' -58.9 NC_004685.1 + 46691 0.7 0.346996
Target:  5'- gGGCCuaucGGCGGCGAuGccacgagacgacaacGCGGUCGAGACg -3'
miRNA:   3'- -UCGGcu--CCGCUGCU-C---------------CGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 3225 0.7 0.359925
Target:  5'- uGCCGGGGCGGgGucGgGGUCGGGcCg -3'
miRNA:   3'- uCGGCUCCGCUgCucCgCUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 18285 0.7 0.359925
Target:  5'- gGGCgGGGuacaGCGGCGAGGUGAUUGucaguGGCg -3'
miRNA:   3'- -UCGgCUC----CGCUGCUCCGCUAGCu----CUG- -5'
19268 5' -58.9 NC_004685.1 + 21878 0.7 0.368175
Target:  5'- aAGcCCGAGGCuGAgccCGAGGCuGAgccCGAGGCu -3'
miRNA:   3'- -UC-GGCUCCG-CU---GCUCCG-CUa--GCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.