miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19268 5' -58.9 NC_004685.1 + 14260 0.7 0.388498
Target:  5'- aAGCCGAGacCGGCGAGGCcaccgacaucgugugGAUCGAaugcGGCg -3'
miRNA:   3'- -UCGGCUCc-GCUGCUCCG---------------CUAGCU----CUG- -5'
19268 5' -58.9 NC_004685.1 + 11075 0.69 0.392824
Target:  5'- uGGCCGcGGCGAcacugcgcagcaaCGGGcGCGAcgcCGAGACg -3'
miRNA:   3'- -UCGGCuCCGCU-------------GCUC-CGCUa--GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 15158 0.69 0.393693
Target:  5'- uGCUG-GGCuuGACGcugGGuGCGAUCGAGGCg -3'
miRNA:   3'- uCGGCuCCG--CUGC---UC-CGCUAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 16535 0.69 0.402449
Target:  5'- cGGCCGaAGGCGAcCGcGGUGAUgGcGGCg -3'
miRNA:   3'- -UCGGC-UCCGCU-GCuCCGCUAgCuCUG- -5'
19268 5' -58.9 NC_004685.1 + 27010 0.69 0.402449
Target:  5'- aGGCUGAGGCGcaagcCGAGGUucgCGAGAg -3'
miRNA:   3'- -UCGGCUCCGCu----GCUCCGcuaGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 41527 0.69 0.408653
Target:  5'- gGGCCGAGGCGuuCGucGCGAcugaacgcaucgcgUCGAcGGCu -3'
miRNA:   3'- -UCGGCUCCGCu-GCucCGCU--------------AGCU-CUG- -5'
19268 5' -58.9 NC_004685.1 + 15062 0.69 0.411329
Target:  5'- -aCCGcGGUGACGAGGUGGcCGGGGa -3'
miRNA:   3'- ucGGCuCCGCUGCUCCGCUaGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 64564 0.69 0.420329
Target:  5'- uGCCGAGcGCGGucuCGAuGGCGAgUCGAG-Ca -3'
miRNA:   3'- uCGGCUC-CGCU---GCU-CCGCU-AGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 391 0.69 0.423963
Target:  5'- cAGCCGccucgagcugcucguAGGCGGC--GGCGAgcUCGGGGCu -3'
miRNA:   3'- -UCGGC---------------UCCGCUGcuCCGCU--AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 21301 0.69 0.429447
Target:  5'- cAGCUGuGGUGGCGcGGCGAggCGAuGCg -3'
miRNA:   3'- -UCGGCuCCGCUGCuCCGCUa-GCUcUG- -5'
19268 5' -58.9 NC_004685.1 + 1741 0.69 0.429447
Target:  5'- uGCCGcGGCGuccGCG-GGCGAUgGcAGACg -3'
miRNA:   3'- uCGGCuCCGC---UGCuCCGCUAgC-UCUG- -5'
19268 5' -58.9 NC_004685.1 + 53431 0.69 0.438681
Target:  5'- aAGCCcuuGGCGAUGucGGCGGUCGGcACu -3'
miRNA:   3'- -UCGGcu-CCGCUGCu-CCGCUAGCUcUG- -5'
19268 5' -58.9 NC_004685.1 + 18908 0.68 0.448027
Target:  5'- uGGCCGAcgcgcgccGCGACGGcGCGggCGAGAUg -3'
miRNA:   3'- -UCGGCUc-------CGCUGCUcCGCuaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 57987 0.68 0.457482
Target:  5'- cAGCCG-GGUGAUGAGGUag-CGGGcACg -3'
miRNA:   3'- -UCGGCuCCGCUGCUCCGcuaGCUC-UG- -5'
19268 5' -58.9 NC_004685.1 + 19924 0.68 0.457482
Target:  5'- cAGCCGAacCGACuauGGCGA-CGAGACg -3'
miRNA:   3'- -UCGGCUccGCUGcu-CCGCUaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 65049 0.68 0.457482
Target:  5'- cGCCGuAGGCGACcaucucGCGGUCGGGcCa -3'
miRNA:   3'- uCGGC-UCCGCUGcuc---CGCUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 29299 0.68 0.457482
Target:  5'- aGGCCGAGcGUuGCGcAGGCGuccUCGAGGa -3'
miRNA:   3'- -UCGGCUC-CGcUGC-UCCGCu--AGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 32267 0.68 0.467043
Target:  5'- cGGCCGccGGUGGCGcGGGCGGUCcugguGGCg -3'
miRNA:   3'- -UCGGCu-CCGCUGC-UCCGCUAGcu---CUG- -5'
19268 5' -58.9 NC_004685.1 + 25844 0.68 0.472829
Target:  5'- cGCUGGGcGCGAUGugaaucuGGGCGAgcggcccgcgcaggUCGGGGCg -3'
miRNA:   3'- uCGGCUC-CGCUGC-------UCCGCU--------------AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 25637 0.68 0.486468
Target:  5'- uGGCCGcGcCGACGucGCGcAUCGAGAUg -3'
miRNA:   3'- -UCGGCuCcGCUGCucCGC-UAGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.