miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19269 3' -50.1 NC_004685.1 + 466 0.68 0.905737
Target:  5'- -cCCGUGGcCGcCACCaUG-UCGGAGACg -3'
miRNA:   3'- guGGUACU-GCuGUGG-ACaAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 1389 0.7 0.824557
Target:  5'- aCACUcgGACccgcggcGCGCCUGUUCGGcuuccGAACa -3'
miRNA:   3'- -GUGGuaCUGc------UGUGGACAAGCC-----UUUG- -5'
19269 3' -50.1 NC_004685.1 + 1533 0.69 0.860047
Target:  5'- gGCCAguucGGCGAUGCCggUGUUCGGuuuccGAACa -3'
miRNA:   3'- gUGGUa---CUGCUGUGG--ACAAGCC-----UUUG- -5'
19269 3' -50.1 NC_004685.1 + 2421 0.68 0.924244
Target:  5'- uGCCA-GACGACgcggccgccggugGCCUGUUCGacGGCg -3'
miRNA:   3'- gUGGUaCUGCUG-------------UGGACAAGCcuUUG- -5'
19269 3' -50.1 NC_004685.1 + 2595 0.69 0.884099
Target:  5'- cCGCCAgGGCGGCauaccgcucgGCCUGcUCGGcAGCg -3'
miRNA:   3'- -GUGGUaCUGCUG----------UGGACaAGCCuUUG- -5'
19269 3' -50.1 NC_004685.1 + 4505 0.68 0.905737
Target:  5'- cCGCagGUGAUucugGCCUGUUCGGAAACc -3'
miRNA:   3'- -GUGg-UACUGcug-UGGACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 5277 0.83 0.230721
Target:  5'- gCACUAUGGCaGC-CCUGUUCGGAAACc -3'
miRNA:   3'- -GUGGUACUGcUGuGGACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 6805 0.73 0.694186
Target:  5'- aGCCAUcGACaACAuccugcucggcuaacCCUGUUCGGAAACc -3'
miRNA:   3'- gUGGUA-CUGcUGU---------------GGACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 8392 0.68 0.905737
Target:  5'- gUACCccGACGGCaACCUGUgccugCGGcuGCc -3'
miRNA:   3'- -GUGGuaCUGCUG-UGGACAa----GCCuuUG- -5'
19269 3' -50.1 NC_004685.1 + 9710 0.69 0.860047
Target:  5'- gACCAUGAcCGACgcucccaagaaGCaagugaccaCUGUUCGGAAACc -3'
miRNA:   3'- gUGGUACU-GCUG-----------UG---------GACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 14956 0.69 0.884099
Target:  5'- cCGCCGUGGCGuGCGCucugcgCUGUUCagguGGggGCu -3'
miRNA:   3'- -GUGGUACUGC-UGUG------GACAAG----CCuuUG- -5'
19269 3' -50.1 NC_004685.1 + 15456 0.72 0.733501
Target:  5'- -uCCGUcccGGCGAgCcCCUGUUCGGAAACc -3'
miRNA:   3'- guGGUA---CUGCU-GuGGACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 16003 0.75 0.555789
Target:  5'- uCAUCuccGGCGACugccuguaagACCUGUUCGGAAACc -3'
miRNA:   3'- -GUGGua-CUGCUG----------UGGACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 17205 0.68 0.905737
Target:  5'- uCGCCAgaaACGACugagUgUGUUCGGAAACc -3'
miRNA:   3'- -GUGGUac-UGCUGu---GgACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 19378 0.69 0.884099
Target:  5'- aGCCcgcUGAUGAacugaCUGUUCGGAAACc -3'
miRNA:   3'- gUGGu--ACUGCUgug--GACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 19697 0.67 0.950946
Target:  5'- gGCCGUGGCGG-GCCgaggcGUUCGGccACa -3'
miRNA:   3'- gUGGUACUGCUgUGGa----CAAGCCuuUG- -5'
19269 3' -50.1 NC_004685.1 + 20336 0.71 0.76524
Target:  5'- aCACCGagGACGACACaCUGcugccgUCGGAGcuGCu -3'
miRNA:   3'- -GUGGUa-CUGCUGUG-GACa-----AGCCUU--UG- -5'
19269 3' -50.1 NC_004685.1 + 26506 0.76 0.491181
Target:  5'- cCGCCAUGugGuugaugcuACGCgggCUGUUCGGAAACc -3'
miRNA:   3'- -GUGGUACugC--------UGUG---GACAAGCCUUUG- -5'
19269 3' -50.1 NC_004685.1 + 33181 0.67 0.936139
Target:  5'- gGCCGgugGugGGCGCCgGUgCGGuGGACg -3'
miRNA:   3'- gUGGUa--CugCUGUGGaCAaGCC-UUUG- -5'
19269 3' -50.1 NC_004685.1 + 33603 0.73 0.689758
Target:  5'- gGCCGcgGugGACAUCUggGUUCGGAugGACg -3'
miRNA:   3'- gUGGUa-CugCUGUGGA--CAAGCCU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.