Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19269 | 3' | -50.1 | NC_004685.1 | + | 43393 | 0.68 | 0.898801 |
Target: 5'- gCACCAUGAUGACcucGCCguUGUUCaGGGu-- -3' miRNA: 3'- -GUGGUACUGCUG---UGG--ACAAG-CCUuug -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 43985 | 0.68 | 0.898801 |
Target: 5'- cCGCCGUGGgagcgUGACAgCCUGga-GGAAACc -3' miRNA: 3'- -GUGGUACU-----GCUGU-GGACaagCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 44728 | 0.7 | 0.833771 |
Target: 5'- uCACCGUGuGCGGCACCggcGUgcccuggugggUCGGAcccGACg -3' miRNA: 3'- -GUGGUAC-UGCUGUGGa--CA-----------AGCCU---UUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 45750 | 0.71 | 0.80551 |
Target: 5'- uCGCCggGGCGGCGCgUGUUCGcu-GCg -3' miRNA: 3'- -GUGGuaCUGCUGUGgACAAGCcuuUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 47550 | 0.67 | 0.941358 |
Target: 5'- uGCCAggUGGCgGGCAgggUGUUCGGAAACc -3' miRNA: 3'- gUGGU--ACUG-CUGUgg-ACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 51224 | 0.66 | 0.963262 |
Target: 5'- cCACCAUGcCGAgACUg--UCGGAcGCc -3' miRNA: 3'- -GUGGUACuGCUgUGGacaAGCCUuUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 57090 | 0.66 | 0.97016 |
Target: 5'- gCACCucGGCGGCGC--GUUCGGAcACg -3' miRNA: 3'- -GUGGuaCUGCUGUGgaCAAGCCUuUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 58737 | 0.69 | 0.860047 |
Target: 5'- uCAUCAUGACGaACGCCUGccCGGc-GCg -3' miRNA: 3'- -GUGGUACUGC-UGUGGACaaGCCuuUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 63072 | 0.71 | 0.785707 |
Target: 5'- gGCUuuucgGACGGC-CCggcgGUUCGGGAACg -3' miRNA: 3'- gUGGua---CUGCUGuGGa---CAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 65323 | 0.66 | 0.959426 |
Target: 5'- gGCCAuuUGacGCGAUACCcg-UCGGGGACc -3' miRNA: 3'- gUGGU--AC--UGCUGUGGacaAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 66555 | 0.67 | 0.930633 |
Target: 5'- gGCCAagucGGCGGC-CCUG--CGGAAGCg -3' miRNA: 3'- gUGGUa---CUGCUGuGGACaaGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 66706 | 0.75 | 0.555789 |
Target: 5'- aGCCAggGAUG-C-CCUGUUCGGAAACc -3' miRNA: 3'- gUGGUa-CUGCuGuGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 67390 | 0.7 | 0.842763 |
Target: 5'- gGCCAggGAauuucgGCCUGUUCGGAAACc -3' miRNA: 3'- gUGGUa-CUgcug--UGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 68124 | 1.1 | 0.004122 |
Target: 5'- aCACCAUGACGACACCUGUUCGGAAACc -3' miRNA: 3'- -GUGGUACUGCUGUGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 68267 | 0.66 | 0.97016 |
Target: 5'- aCGCgCAUGAgGAgG--UGUUCGGAAGCc -3' miRNA: 3'- -GUG-GUACUgCUgUggACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 68548 | 0.67 | 0.944842 |
Target: 5'- gGCCAguccGAUgcgGGCGCCccgaugcgucggggUGUUCGGAAACc -3' miRNA: 3'- gUGGUa---CUG---CUGUGG--------------ACAAGCCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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